Log of /branches/v4-00

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Revision 1481 - Directory Listing
Modified Fri Jan 27 01:46:28 2012 UTC (15 months, 3 weeks ago) by bseilhan

Dramatic performance enhancement by decreasing the number of entries in the PCA fit matrix

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Revision 1480 - Directory Listing
Modified Fri Jan 27 01:46:16 2012 UTC (15 months, 3 weeks ago) by bseilhan

Implement backward fits in TPCKalman module

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Revision 1479 - Directory Listing
Modified Fri Jan 27 01:46:03 2012 UTC (15 months, 3 weeks ago) by bseilhan

Update Production QA macro to select between forward and backward fits

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Revision 1478 - Directory Listing
Modified Fri Jan 27 01:45:51 2012 UTC (15 months, 3 weeks ago) by bseilhan

Copy of ProductionQA.C macro in ana/macros with extra plots and modifications for my analysis

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Revision 1468 - Directory Listing
Modified Tue Jan 17 18:50:12 2012 UTC (16 months ago) by bseilhan

revert the changes to make it compile on Linux

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Revision 1467 - Directory Listing
Modified Tue Jan 17 18:41:16 2012 UTC (16 months ago) by bseilhan

Add another plot for ADC of tracks within azimuth cut.

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Revision 1466 - Directory Listing
Modified Tue Jan 17 18:41:03 2012 UTC (16 months ago) by bseilhan

Fix some errors in histogram filling for CosPolarVsAzimuth
Add new Azimuth_PolarCut histogram

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Revision 1448 - Directory Listing
Modified Fri Dec 16 05:56:10 2011 UTC (17 months ago) by bseilhan

Merge branch 'master' into v4-00

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Revision 1446 - Directory Listing
Modified Thu Dec 15 20:08:27 2011 UTC (17 months ago) by bseilhan
Copied from: trunk revision 1445

branch for v4.00 release

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Revision 1445 - Directory Listing
Modified Thu Dec 15 20:04:57 2011 UTC (17 months ago) by bseilhan
Original Path: trunk

Another Id10T error, ssh-agent now gets properly killed

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Revision 1444 - Directory Listing
Modified Thu Dec 15 19:00:03 2011 UTC (17 months ago) by bseilhan
Original Path: trunk

Updates to datahandling scripts for ticket #59

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Revision 1443 - Directory Listing
Modified Thu Dec 15 18:57:48 2011 UTC (17 months ago) by bseilhan
Original Path: trunk

Bug fixes in my analysis scripts

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Revision 1442 - Directory Listing
Modified Thu Dec 15 18:57:44 2011 UTC (17 months ago) by bseilhan
Original Path: trunk

Add sript to convert all histograms in a rootfile to gif's

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Revision 1441 - Directory Listing
Modified Thu Dec 15 16:27:10 2011 UTC (17 months ago) by rgbaker
Original Path: trunk

First pass at a "production" analysis macro to generate a variety of standard histograms

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Revision 1440 - Directory Listing
Modified Wed Dec 14 01:20:44 2011 UTC (17 months, 1 week ago) by bseilhan
Original Path: trunk

Bug fixes on the poduction scripts for aztec
 now removes tmp directory
 uses lscratchc rather than /tmp

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Revision 1439 - Directory Listing
Modified Tue Dec 13 23:44:39 2011 UTC (17 months, 1 week ago) by hqu
Original Path: trunk

Update to record slow control informations

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Revision 1438 - Directory Listing
Modified Sun Dec 11 19:53:28 2011 UTC (17 months, 1 week ago) by hqu
Original Path: trunk

fix uninitialized variables, get the proper directory and update the metod to retrieve the histogram from the list

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Revision 1437 - Directory Listing
Modified Fri Dec 9 20:52:08 2011 UTC (17 months, 1 week ago) by bseilhan
Original Path: trunk

Fix overwrite of LD_LIBRARY_PATH (Ticket #47)

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Revision 1436 - Directory Listing
Modified Thu Dec 8 19:59:52 2011 UTC (17 months, 1 week ago) by rgbaker
Original Path: trunk

Need lower Track ADC Threshold for recoil protons in beam data.

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Revision 1435 - Directory Listing
Modified Thu Dec 8 19:11:14 2011 UTC (17 months, 1 week ago) by rgbaker
Original Path: trunk

Add kFitKalmanSmoothBackwards enum constant in addition to kFitKalmanSmooth

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Revision 1434 - Directory Listing
Modified Thu Dec 8 18:30:05 2011 UTC (17 months, 1 week ago) by rgbaker
Original Path: trunk

Add new enumerated fit type, "kFitKalmanSmooth = 105" and update TPCKalman.cxx to store the smoth fit using this value instead of the misleading kFitKalmanBackwards
Update analysis macros that incorrectly used the numeric value instead the name of the constant.

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Revision 1433 - Directory Listing
Modified Wed Dec 7 20:50:19 2011 UTC (17 months, 2 weeks ago) by swatson
Original Path: trunk

Removed checks for stdint.h types (uint32_t, uint64_t, etc.) because the checks fail on some systems that actually have these types ([ticket:26]).

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Revision 1432 - Directory Listing
Modified Wed Dec 7 16:07:19 2011 UTC (17 months, 2 weeks ago) by swatson
Original Path: trunk

Restored MicroMegas (third) supply to HV frontend.  Added additional current limit capabilities required for MicroMegas ramping [ticket:25 Ticket#25].

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Revision 1431 - Directory Listing
Modified Tue Dec 6 19:39:06 2011 UTC (17 months, 2 weeks ago) by swatson
Original Path: trunk

PS300 HV read error fixes from last month.

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Revision 1430 - Directory Listing
Modified Mon Dec 5 21:19:34 2011 UTC (17 months, 2 weeks ago) by bseilhan
Original Path: trunk

more debugging of production scripts

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Revision 1429 - Directory Listing
Modified Mon Dec 5 18:18:05 2011 UTC (17 months, 2 weeks ago) by bseilhan
Original Path: trunk

Updates to production scripts

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Revision 1428 - Directory Listing
Modified Fri Dec 2 19:27:24 2011 UTC (17 months, 2 weeks ago) by bseilhan
Original Path: trunk

batch file updates (debuggin mostly)

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Revision 1427 - Directory Listing
Modified Fri Dec 2 18:34:55 2011 UTC (17 months, 2 weeks ago) by bseilhan
Original Path: trunk

Doxygen Headers and footers (empty) for Trac Markup

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Revision 1426 - Directory Listing
Modified Fri Dec 2 16:23:55 2011 UTC (17 months, 2 weeks ago) by rgbaker
Original Path: trunk

Change excessively verbose info message to debug

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Revision 1425 - Directory Listing
Modified Fri Dec 2 01:06:56 2011 UTC (17 months, 2 weeks ago) by thornton
Original Path: trunk

Forgot to update this file when I added the ability to have multiple sources [comment:3:ticket:27 Ticket#27]

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Revision 1424 - Directory Listing
Modified Fri Dec 2 00:54:48 2011 UTC (17 months, 2 weeks ago) by bseilhan
Original Path: trunk

bug fixes for data handling scripts

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Revision 1423 - Directory Listing
Modified Fri Dec 2 00:54:45 2011 UTC (17 months, 2 weeks ago) by bseilhan
Original Path: trunk

fix more bugs, add diagnostics

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Revision 1422 - Directory Listing
Modified Thu Dec 1 23:38:02 2011 UTC (17 months, 2 weeks ago) by bseilhan
Original Path: trunk

Add full chain configuration for production

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Revision 1421 - Directory Listing
Modified Thu Dec 1 23:13:59 2011 UTC (17 months, 2 weeks ago) by bseilhan
Original Path: trunk

Add new production scripts for aztec

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Revision 1420 - Directory Listing
Modified Wed Nov 30 23:08:52 2011 UTC (17 months, 2 weeks ago) by thornton
Original Path: trunk

Added step limit to the source, source backing, and source cover materials inside of particle transport simulation equal to half the corresponding material thickness.

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Revision 1419 - Directory Listing
Modified Wed Nov 30 21:38:21 2011 UTC (17 months, 3 weeks ago) by bseilhan
Original Path: trunk

Pick up /usr/lib gsl libraries

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Revision 1418 - Directory Listing
Modified Wed Nov 30 21:38:09 2011 UTC (17 months, 3 weeks ago) by bseilhan
Original Path: trunk

Event Rate Analysis Macros

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Revision 1417 - Directory Listing
Modified Wed Nov 30 17:45:25 2011 UTC (17 months, 3 weeks ago) by bseilhan
Original Path: trunk

Fixed bug in script which caused files to be missed.  They were too new to transfer but too old on next attempt.  now skipped files timestamps are updated

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Revision 1416 - Directory Listing
Modified Tue Nov 29 01:23:35 2011 UTC (17 months, 3 weeks ago) by bseilhan
Original Path: trunk

I forgot to take into account the directory at the beginning of the filename, now I have un-forgot

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Revision 1415 - Directory Listing
Modified Tue Nov 29 01:23:33 2011 UTC (17 months, 3 weeks ago) by bseilhan
Original Path: trunk

added some debuggin output and changed pcaps to master

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Revision 1414 - Directory Listing
Modified Tue Nov 29 00:36:32 2011 UTC (17 months, 3 weeks ago) by bseilhan
Original Path: trunk

fix a missing description string

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Revision 1413 - Directory Listing
Modified Tue Nov 29 00:33:48 2011 UTC (17 months, 3 weeks ago) by bseilhan
Original Path: trunk

change incorrect directories

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Revision 1412 - Directory Listing
Modified Tue Nov 29 00:31:11 2011 UTC (17 months, 3 weeks ago) by bseilhan
Original Path: trunk

script to find missing datafiles.

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Revision 1411 - Directory Listing
Modified Wed Nov 23 18:26:18 2011 UTC (17 months, 4 weeks ago) by thornton
Original Path: trunk

Added ability to use predefined targets/sources or define a custom one. The backing and cover for the source must be made up of a single element that is already defined in the element tree. Updated the simulation documentation to correspond with the changes. Examples are shown in the documentation.

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Revision 1410 - Directory Listing
Modified Tue Nov 22 03:21:02 2011 UTC (17 months, 4 weeks ago) by bseilhan
Original Path: trunk

Script to create .dylib -> .so links on osx

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Revision 1409 - Directory Listing
Modified Mon Nov 21 23:57:04 2011 UTC (17 months, 4 weeks ago) by rgbaker
Original Path: trunk

Instantiate the NiffteGeometryMap before creating configuration object for job so that the correct geometry version is recorded

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Revision 1408 - Directory Listing
Modified Fri Nov 18 18:39:58 2011 UTC (18 months ago) by bseilhan
Original Path: trunk

Add check to make sure file wasn't changed in last 2 hours

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Revision 1407 - Directory Listing
Modified Fri Nov 18 18:39:46 2011 UTC (18 months ago) by bseilhan
Original Path: trunk

build changes to add pyroot to path

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Revision 1406 - Directory Listing
Modified Thu Nov 17 19:02:59 2011 UTC (18 months ago) by bwendt
Original Path: trunk

Created image directories and added ROOT plots

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Revision 1405 - Directory Listing
Modified Thu Nov 17 18:33:28 2011 UTC (18 months ago) by bseilhan
Original Path: trunk

must explicitly start ssh-agent to use keys in cron-job

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Revision 1404 - Directory Listing
Modified Thu Nov 17 01:34:26 2011 UTC (18 months ago) by bseilhan
Original Path: trunk

add ssh key support and fix up some issues with rsync command

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Revision 1403 - Directory Listing
Modified Wed Nov 16 19:50:06 2011 UTC (18 months ago) by bwendt
Original Path: trunk

Added functionality and corrected errors

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Revision 1402 - Directory Listing
Modified Wed Nov 16 18:24:45 2011 UTC (18 months ago) by bseilhan
Original Path: trunk

Add compression per [comment:2:ticket:7 Ticket#7]

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Revision 1401 - Directory Listing
Modified Tue Nov 15 23:15:06 2011 UTC (18 months ago) by bseilhan
Original Path: trunk

add datahandling area.  This area is to hold data handling scripts for automatictransfer and production processing.

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Revision 1400 - Directory Listing
Modified Tue Nov 15 14:40:05 2011 UTC (18 months ago) by thornton
Original Path: trunk

Updating to use the other "more correct" way of defining the gas inside the Geant4 simulation

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Revision 1399 - Directory Listing
Modified Wed Nov 9 18:24:10 2011 UTC (18 months, 1 week ago) by bwendt
Original Path: trunk

Periodic update, added a lot of functionality.

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Revision 1398 - Directory Listing
Modified Tue Nov 8 14:22:40 2011 UTC (18 months, 1 week ago) by rgbaker
Original Path: trunk

Luke's XML file for "standard" reconstruction

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Revision 1397 - Directory Listing
Modified Thu Nov 3 23:19:37 2011 UTC (18 months, 2 weeks ago) by hqu
Original Path: trunk

fix for redraw 2PolyHisto for new run

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Revision 1396 - Directory Listing
Modified Tue Nov 1 20:31:57 2011 UTC (18 months, 2 weeks ago) by hqu
Original Path: trunk

add back standalone waveform check

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Revision 1395 - Directory Listing
Modified Tue Nov 1 20:20:14 2011 UTC (18 months, 2 weeks ago) by hqu
Original Path: trunk

add back standalone waveform check configure.ac

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Revision 1394 - Directory Listing
Modified Fri Oct 21 21:07:16 2011 UTC (19 months ago) by swatson
Original Path: trunk

Changed Black Stack to continuous scanning mode to reduce time spent blocking on reads.  Fixed small bug in DaqScan FE.

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Revision 1393 - Directory Listing
Modified Thu Oct 20 23:55:18 2011 UTC (19 months ago) by bwendt
Original Path: trunk

More additions/improvements. Now includes analysis submenu and can perform a rough 'normalization' of all waveforms to a user-selected 'truth' waveform.

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Revision 1392 - Directory Listing
Modified Wed Oct 19 21:54:57 2011 UTC (19 months ago) by swatson
Original Path: trunk

Removed the Field Cage Bottom supply from the TPC HV frontend.

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Revision 1391 - Directory Listing
Modified Tue Oct 18 23:10:14 2011 UTC (19 months ago) by swatson
Original Path: trunk

Fixed an issue with online demux performance (symptom cdr file much smaller than pcap at end of run).

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Revision 1390 - Directory Listing
Modified Tue Oct 18 18:27:37 2011 UTC (19 months ago) by bwendt
Original Path: trunk

Changed directory name for compatibility in ROOT

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Revision 1389 - Directory Listing
Modified Tue Oct 18 18:17:06 2011 UTC (19 months ago) by bwendt
Original Path: trunk

Changed directory structure, modified analysis macro

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Revision 1388 - Directory Listing
Modified Tue Oct 18 15:37:17 2011 UTC (19 months ago) by bseilhan
Original Path: trunk

fix bash syntax error

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Revision 1387 - Directory Listing
Modified Mon Oct 17 21:50:56 2011 UTC (19 months ago) by swatson
Original Path: trunk

Added untested driver for the Keithley (volts in, resistance in, temperature in and digital out).

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Revision 1386 - Directory Listing
Modified Wed Oct 12 21:03:45 2011 UTC (19 months, 1 week ago) by thornton
Original Path: trunk

Fixed typo

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Revision 1385 - Directory Listing
Modified Wed Oct 12 20:18:42 2011 UTC (19 months, 1 week ago) by rgbaker
Original Path: trunk

Updates to generate various vertex offset plots

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Revision 1384 - Directory Listing
Modified Wed Oct 12 13:51:23 2011 UTC (19 months, 1 week ago) by bwendt
Original Path: trunk

Added HiSCaR/Preamp data analysis code (in ROOT) and screenshots

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Revision 1383 - Directory Listing
Modified Tue Oct 11 21:13:58 2011 UTC (19 months, 1 week ago) by swatson
Original Path: trunk

Additional changes related to 24-bit sequence number roll over in demux.

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Revision 1382 - Directory Listing
Modified Tue Oct 11 18:58:57 2011 UTC (19 months, 1 week ago) by rgbaker
Original Path: trunk

Fixed bug setting digit creation threshold

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Revision 1381 - Directory Listing
Modified Tue Oct 11 15:47:43 2011 UTC (19 months, 1 week ago) by rgbaker
Original Path: trunk

My version of Luke's analysis macro with an attempt to use average diffusion to correct the start position of the track

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Revision 1380 - Directory Listing
Modified Mon Oct 10 22:36:36 2011 UTC (19 months, 1 week ago) by swatson
Original Path: trunk

Adjusted handling of EtherDAQ packet numbers (frame sequence numbers) in demux to roll-over at 24-bits instead of 32.  The field in the Ethernet frames is still 32-bits wide.

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Revision 1379 - Directory Listing
Modified Fri Oct 7 20:41:43 2011 UTC (19 months, 2 weeks ago) by thornton
Original Path: trunk

Fixed a few typos

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Revision 1378 - Directory Listing
Modified Fri Oct 7 20:28:02 2011 UTC (19 months, 2 weeks ago) by thornton
Original Path: trunk

Forgot to update this two revisions ago. Added functions to get the drift speed of each volume.

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Revision 1377 - Directory Listing
Modified Fri Oct 7 20:24:01 2011 UTC (19 months, 2 weeks ago) by thornton
Original Path: trunk

Made the default source material smaller than it was and set the default source intensity to 10 nBq.

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Revision 1376 - Directory Listing
Modified Fri Oct 7 20:17:17 2011 UTC (19 months, 2 weeks ago) by thornton
Original Path: trunk

Added a detsim module that finishes the coincidence events simulation done in the particle transport. This module should be run after TPCDiffusion and before TPCLatching. Also updated the corresponding detsim doxygen commit file.

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Revision 1375 - Directory Listing
Modified Fri Oct 7 18:13:59 2011 UTC (19 months, 2 weeks ago) by thornton
Original Path: trunk

Forgot to include the Makefile and LinkDef.h in last update

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Revision 1374 - Directory Listing
Modified Fri Oct 7 18:12:35 2011 UTC (19 months, 2 weeks ago) by thornton
Original Path: trunk

Changed TPCRandomHits to TPCRandPreAmpSignal. Changed the module to work with TPCDigits instead of MCHits. Updated xml files that use the module and the documentation

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Revision 1373 - Directory Listing
Modified Thu Oct 6 20:45:11 2011 UTC (19 months, 2 weeks ago) by bwendt
Original Path: trunk

Added libraries required to compile (NDISProt driver must be installed and started to run EtherDaqGUI.exe - this are not provided here). Solved some issues that prevented building in Visual Studio 2010.

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Revision 1372 - Directory Listing
Modified Wed Oct 5 23:59:22 2011 UTC (19 months, 2 weeks ago) by lsnyder
Original Path: trunk

add a macro to the sandbox

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Revision 1371 - Directory Listing
Modified Wed Oct 5 23:14:56 2011 UTC (19 months, 2 weeks ago) by hqu
Original Path: trunk

fix for hanging issue and add 2D histo for pad plane 

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Revision 1370 - Directory Listing
Modified Wed Oct 5 23:06:25 2011 UTC (19 months, 2 weeks ago) by hqu
Original Path: trunk

fix for hanging issue and add 2D histo for pad plane 

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Revision 1369 - Directory Listing
Modified Wed Oct 5 21:41:47 2011 UTC (19 months, 2 weeks ago) by thornton
Original Path: trunk

Changed the coincidence events to only work on alphas for the moment.

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Revision 1368 - Directory Listing
Modified Wed Oct 5 18:54:25 2011 UTC (19 months, 2 weeks ago) by thornton
Original Path: trunk

Fixed typo

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Revision 1367 - Directory Listing
Modified Wed Oct 5 18:05:00 2011 UTC (19 months, 2 weeks ago) by thornton
Original Path: trunk

Optimized a little bit. Converted recursion functions into an iteration process, and store previous percent calculations for further use.

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Revision 1366 - Directory Listing
Modified Tue Oct 4 20:19:29 2011 UTC (19 months, 2 weeks ago) by thornton
Original Path: trunk

Another fix

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Revision 1365 - Directory Listing
Modified Tue Oct 4 20:05:46 2011 UTC (19 months, 2 weeks ago) by thornton
Original Path: trunk

Fixed an if syntax error

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Revision 1364 - Directory Listing
Modified Tue Oct 4 19:41:51 2011 UTC (19 months, 2 weeks ago) by bwendt
Original Path: trunk

Imported EtherDaqGUI code.

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Revision 1363 - Directory Listing
Modified Tue Oct 4 19:04:11 2011 UTC (19 months, 2 weeks ago) by bwendt
Original Path: trunk

Added sandbox for bwendt. Includes EtherDaqGUI directory to keep modifications under subversion control.

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Revision 1362 - Directory Listing
Modified Mon Oct 3 15:55:15 2011 UTC (19 months, 2 weeks ago) by bwendt
Original Path: trunk

Added data file for spontaneous decay sampling. It was previously overlooked.

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Revision 1361 - Directory Listing
Modified Sun Oct 2 19:15:35 2011 UTC (19 months, 2 weeks ago) by bseilhan
Original Path: trunk

Properly setup GSLDIR

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Revision 1360 - Directory Listing
Modified Fri Sep 30 20:19:07 2011 UTC (19 months, 3 weeks ago) by hqu
Original Path: trunk

One more bug fix

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Revision 1359 - Directory Listing
Modified Fri Sep 30 18:36:22 2011 UTC (19 months, 3 weeks ago) by hqu
Original Path: trunk

update RawIO file open cheksum and more corrections

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Revision 1358 - Directory Listing
Modified Fri Sep 30 14:35:00 2011 UTC (19 months, 3 weeks ago) by hqu
Original Path: trunk

Set up proper directory. 

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Revision 1357 - Directory Listing
Modified Fri Sep 30 04:47:29 2011 UTC (19 months, 3 weeks ago) by hqu
Original Path: trunk

Update for the monitoring to be run online mode 

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Revision 1356 - Directory Listing
Modified Thu Sep 29 23:58:16 2011 UTC (19 months, 3 weeks ago) by bseilhan
Original Path: trunk

Don't really remove OnlineMonitoring from build

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Revision 1355 - Directory Listing
Modified Thu Sep 29 23:58:14 2011 UTC (19 months, 3 weeks ago) by bseilhan
Original Path: trunk

changes to get it to compile and run now

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Revision 1354 - Directory Listing
Modified Thu Sep 29 23:50:55 2011 UTC (19 months, 3 weeks ago) by bseilhan
Original Path: trunk

Update to use new DriftSpeedMethod

Conflicts:

	ana/macros/testGeoEVD.C

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Revision 1353 - Directory Listing
Modified Thu Sep 29 23:50:50 2011 UTC (19 months, 3 weeks ago) by bseilhan
Original Path: trunk

Pickup non-system version of gsl

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Revision 1352 - Directory Listing
Modified Thu Sep 29 23:38:53 2011 UTC (19 months, 3 weeks ago) by meharchand
Original Path: trunk

My first test macrox

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Revision 1351 - Directory Listing
Modified Thu Sep 29 20:59:05 2011 UTC (19 months, 3 weeks ago) by bseilhan
Original Path: trunk

add first pass at basic submission sctipts

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Revision 1350 - Directory Listing
Modified Tue Sep 27 14:48:08 2011 UTC (19 months, 3 weeks ago) by thornton
Original Path: trunk

Fixed small error

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Revision 1349 - Directory Listing
Modified Mon Sep 26 01:22:55 2011 UTC (19 months, 3 weeks ago) by thornton
Original Path: trunk

Fixed warning received from some compilers. Finished documenting with Doxygen style commits. Changed headers for Brycen's fission generator code so the Doxygen code will recognize there is a file there. All simulation code should be documented with Doxygen style commits except the code that deals with the geant_gen_fission simulation.

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Revision 1348 - Directory Listing
Modified Sun Sep 25 20:09:40 2011 UTC (19 months, 3 weeks ago) by thornton
Original Path: trunk

Recommitting update so the Geant4 makefile does not assume that postgress was installed in /usr/local

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Revision 1347 - Directory Listing
Modified Wed Sep 21 21:57:47 2011 UTC (19 months, 4 weeks ago) by rgbaker
Original Path: trunk

Repair syntax error in BASH setup script

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Revision 1346 - Directory Listing
Modified Mon Sep 19 21:06:04 2011 UTC (20 months ago) by rgbaker
Original Path: trunk

Modify setup scripts so that the correct base directory path is found for plexi and aztec clusters

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Revision 1345 - Directory Listing
Modified Mon Sep 19 18:40:50 2011 UTC (20 months ago) by rgbaker
Original Path: trunk

Revised pseudo-script for complete installation so that G4 shared libraries are not enabled.

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Revision 1344 - Directory Listing
Modified Mon Sep 19 18:37:47 2011 UTC (20 months ago) by rgbaker
Original Path: trunk

Add NIFFTE_G4_USE_OLD_LOWENERGY=y to standard setup scripts (needed for default version of geant4)

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Revision 1343 - Directory Listing
Modified Mon Sep 19 07:24:36 2011 UTC (20 months ago) by jhumphrey
Original Path: trunk

Initial commit for LMS and RLS and some of the derivatives. The cost functions still need to be added to the configuration.

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Revision 1342 - Directory Listing
Modified Fri Sep 16 22:48:00 2011 UTC (20 months ago) by hqu
Original Path: trunk

statement correction

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Revision 1341 - Directory Listing
Modified Fri Sep 16 22:40:33 2011 UTC (20 months ago) by hqu
Original Path: trunk

write histogram to directory of /DET/VIEW/HISTO in root file

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Revision 1340 - Directory Listing
Modified Thu Sep 15 21:29:38 2011 UTC (20 months ago) by swatson
Original Path: trunk

OS X build improvements.  Changed HV demand behavior for voltage beyond limit (similar to Brandon's suggestion).

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Revision 1339 - Directory Listing
Modified Thu Sep 15 17:32:22 2011 UTC (20 months ago) by verena
Original Path: trunk

analysis macro to sum waveforms for a track

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Revision 1338 - Directory Listing
Modified Thu Sep 15 00:58:50 2011 UTC (20 months ago) by hqu
Original Path: trunk

remove /usr/include for rootcint to prevent bug in case

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Revision 1337 - Directory Listing
Modified Thu Sep 15 00:56:47 2011 UTC (20 months ago) by hqu
Original Path: trunk

remove /usr/include for rootcint to prevent bug in case

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Revision 1336 - Directory Listing
Modified Thu Sep 15 00:53:28 2011 UTC (20 months ago) by hqu
Original Path: trunk

remove /usr/include for rootcint to prevent bug in case

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Revision 1335 - Directory Listing
Modified Thu Sep 15 00:51:59 2011 UTC (20 months ago) by hqu
Original Path: trunk

remove /usr/include for rootcint to prevent bug in case

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Revision 1334 - Directory Listing
Modified Thu Sep 15 00:49:44 2011 UTC (20 months ago) by hqu
Original Path: trunk

remove /usr/include for rootcint to prevent bug in case

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Revision 1333 - Directory Listing
Modified Thu Sep 15 00:45:43 2011 UTC (20 months ago) by hqu
Original Path: trunk

remove /usr/include for rootcint to prevent bug in case

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Revision 1332 - Directory Listing
Modified Thu Sep 15 00:38:23 2011 UTC (20 months ago) by hqu
Original Path: trunk

bug fix for type

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Revision 1331 - Directory Listing
Modified Wed Sep 14 23:57:32 2011 UTC (20 months ago) by hqu
Original Path: trunk

Add inprogress online ana and monitoring package

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Revision 1330 - Directory Listing
Modified Wed Sep 14 23:54:59 2011 UTC (20 months ago) by hqu
Original Path: trunk

Add inprogress online ana and monitoring package

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Revision 1329 - Directory Listing
Modified Wed Sep 14 23:44:15 2011 UTC (20 months ago) by hqu
Original Path: trunk

Add inprogress online ana and monitoring package

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Revision 1328 - Directory Listing
Modified Wed Sep 14 23:38:01 2011 UTC (20 months ago) by hqu
Original Path: trunk

Add inprogress online ana and monitoring package

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Revision 1327 - Directory Listing
Modified Tue Sep 13 20:08:17 2011 UTC (20 months, 1 week ago) by rgbaker
Original Path: trunk

Include installation of doxygen

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Revision 1326 - Directory Listing
Modified Tue Sep 13 18:50:13 2011 UTC (20 months, 1 week ago) by thornton
Original Path: trunk

Accidentally uploaded the output from running Doxygen

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Revision 1325 - Directory Listing
Modified Tue Sep 13 18:47:26 2011 UTC (20 months, 1 week ago) by thornton
Original Path: trunk

Added a simulation manual to the repository that is generated with Doxygen. This will allow developers be able to get the latest simulation documentation by running doc/Simulation_Manual/Doxyfile from $NIFFTE.

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Revision 1324 - Directory Listing
Modified Mon Sep 12 12:34:25 2011 UTC (20 months, 1 week ago) by thornton
Original Path: trunk

Updated function ReadFromFile to be able to read in a .csv file (convention that we have already been using) that contains one line with three entries; driftSpeed0,driftSpeed1,clockFreq.

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Revision 1323 - Directory Listing
Modified Fri Sep 9 19:05:22 2011 UTC (20 months, 1 week ago) by thornton
Original Path: trunk

Changed the maximum step size to be the minimum between half the pitch of the pad and half the length of a "slice". Also changed naming convention. The source plating is now called the source cover since.

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Revision 1322 - Directory Listing
Modified Fri Sep 9 18:48:43 2011 UTC (20 months, 1 week ago) by bseilhan
Original Path: trunk

Revert change made in r1319 that causes compilation problems on other systems.

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Revision 1321 - Directory Listing
Modified Fri Sep 9 18:48:23 2011 UTC (20 months, 1 week ago) by bseilhan
Original Path: trunk

 Copied from ana/sandbox/rgbaker to modify as a template for various macros

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Revision 1320 - Directory Listing
Modified Fri Sep 9 18:48:15 2011 UTC (20 months, 1 week ago) by bseilhan
Original Path: trunk

Copy macro from ana/sandbox/shon to modify

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Revision 1319 - Directory Listing
Modified Fri Sep 9 15:29:01 2011 UTC (20 months, 1 week ago) by bseilhan
Original Path: trunk

Remove TPCPadCalibMaker in reco/ directory in favor of one in calib/

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Revision 1318 - Directory Listing
Modified Fri Sep 9 15:28:46 2011 UTC (20 months, 1 week ago) by bseilhan
Original Path: trunk

Fix makefile to pick up pgsql libraries and headers using pg_config, not assuming /usr/local/...

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Revision 1317 - Directory Listing
Modified Tue Sep 6 17:04:39 2011 UTC (20 months, 2 weeks ago) by rgbaker
Original Path: trunk

Update geometry objects to allow for different numbers of buckets in each volume

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Revision 1316 - Directory Listing
Modified Tue Sep 6 16:06:58 2011 UTC (20 months, 2 weeks ago) by rgbaker
Original Path: trunk

Integrate new DriftParameters calibration objects into framework.  
Users should not see any change, but the underlying data structure now has two independent drift speeds, one for each volume, plus a clock rate parameter
Although the Geometry objects store two drift speeds, they have not yet been updated to allow different numbers of buckets for each volume

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Revision 1315 - Directory Listing
Modified Tue Sep 6 07:28:52 2011 UTC (20 months, 2 weeks ago) by rgbaker
Original Path: trunk

Implementation of new calibration object to hold separate drift speeds for each volume plus clock rate
This new object is not yet integrated into the calibration management, so there is no impact to existing code yet...

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Revision 1314 - Directory Listing
Modified Fri Sep 2 16:11:24 2011 UTC (20 months, 2 weeks ago) by rgbaker
Original Path: trunk

Move Drift speed calibration module into calib directory

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Revision 1313 - Directory Listing
Modified Fri Sep 2 01:13:58 2011 UTC (20 months, 2 weeks ago) by rgbaker
Original Path: trunk

Move implementation of SetTrackCov methods to .cxx from .h file

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Revision 1312 - Directory Listing
Modified Fri Sep 2 01:01:48 2011 UTC (20 months, 2 weeks ago) by bseilhan
Original Path: trunk

This fix should allow modules in the tpc/calib directory to be picked up by niffte.  I have not worked out a minimal rebuild to pick up the changes but, a full rebuild seemed to do the trick.

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Revision 1311 - Directory Listing
Modified Fri Sep 2 01:00:57 2011 UTC (20 months, 2 weeks ago) by bseilhan
Original Path: trunk

Fix Bug causing expression always to evaluate to True.

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Revision 1310 - Directory Listing
Modified Thu Sep 1 23:04:50 2011 UTC (20 months, 2 weeks ago) by bseilhan
Original Path: trunk

Added dummy module for Pad Calibration

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Revision 1309 - Directory Listing
Modified Thu Sep 1 22:29:13 2011 UTC (20 months, 2 weeks ago) by thornton
Original Path: trunk

Changed the calculation of the transverse part. Fixed problem looking at waveform.

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Revision 1308 - Directory Listing
Modified Thu Sep 1 20:49:55 2011 UTC (20 months, 2 weeks ago) by thornton
Original Path: trunk

Fix compile error

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Revision 1307 - Directory Listing
Modified Wed Aug 31 22:31:57 2011 UTC (20 months, 2 weeks ago) by jhumphrey
Original Path: trunk

quick fix for handling svd decomposition error

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Revision 1306 - Directory Listing
Modified Wed Aug 31 00:21:09 2011 UTC (20 months, 3 weeks ago) by thornton
Original Path: trunk

Added check if conservation of charge was kept through the event. Fixed a bug in TPCDiffusion.cxx that caused certain tracks to not conserve energy

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Revision 1305 - Directory Listing
Modified Tue Aug 30 22:55:30 2011 UTC (20 months, 3 weeks ago) by swatson
Original Path: trunk

Added magic value for TPCRaw's TriggerThreshold config option.  When set to "-1", the normal FPGA internal triggering will be bypassed and all waveform data wil be recorded.

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Revision 1304 - Directory Listing
Modified Tue Aug 30 22:32:30 2011 UTC (20 months, 3 weeks ago) by swatson
Original Path: trunk

Compile fix Re: new TrackMerger module.

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Revision 1303 - Directory Listing
Modified Tue Aug 30 20:35:49 2011 UTC (20 months, 3 weeks ago) by rgbaker
Original Path: trunk

Remove excess print (MsgInfo) statements from Track Merger

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Revision 1302 - Directory Listing
Modified Tue Aug 30 20:33:25 2011 UTC (20 months, 3 weeks ago) by rgbaker
Original Path: trunk

New xml file to run new TPCTrackMerger after TPCHoughD and before TPCKalman

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Revision 1301 - Directory Listing
Modified Tue Aug 30 20:03:13 2011 UTC (20 months, 3 weeks ago) by rgbaker
Original Path: trunk

Update config files because ADC Threshold value is double, not int

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Revision 1300 - Directory Listing
Modified Tue Aug 30 19:53:57 2011 UTC (20 months, 3 weeks ago) by rgbaker
Original Path: trunk

First working version of track merge module

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Revision 1299 - Directory Listing
Modified Tue Aug 30 19:20:46 2011 UTC (20 months, 3 weeks ago) by swatson
Original Path: trunk

Updated MCHit drawing (use new xyz coords, smaller boxes).  Improved event navigation for files with gaps in between event numbers.

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Revision 1298 - Directory Listing
Modified Tue Aug 30 18:43:07 2011 UTC (20 months, 3 weeks ago) by rgbaker
Original Path: trunk

Fix allocation of arrays in TPCClusterFinder to account for non-static number of buckets.
Arrays are allocated and deallocated each event
First (incomplete, untested) implementation of TPCTrackMerger module

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Revision 1297 - Directory Listing
Modified Tue Aug 30 15:09:38 2011 UTC (20 months, 3 weeks ago) by thornton
Original Path: trunk

Fixed another error that caused -Edep in TPCDiffusion. Added more debug statements to TPCDiffusion and changed method of finding vertex positions of neighboring pads. Added check in TPCLatching, TPCChargeSharing and TPCDiffusion to see if setting are equal to 0, causing them not to simulate the process. Added information to debug statements in TPCDigitizer.

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Revision 1296 - Directory Listing
Modified Mon Aug 29 22:53:36 2011 UTC (20 months, 3 weeks ago) by rgbaker
Original Path: trunk

DigitIncludeList is again part of TPCTrackFit and NiffteTPCTrackFit
Kalman Fitter and Event Display reverted to again use the digit include list
Generalize covariance matrix for variable length
Further attempts to stabilize Drift Speed calibration

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Revision 1295 - Directory Listing
Modified Mon Aug 29 21:39:27 2011 UTC (20 months, 3 weeks ago) by thornton
Original Path: trunk

Fixed bug that made code not compile on older compilers

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Revision 1294 - Directory Listing
Modified Mon Aug 29 20:44:27 2011 UTC (20 months, 3 weeks ago) by thornton
Original Path: trunk

Fixed bug that created -Edep

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Revision 1293 - Directory Listing
Modified Thu Aug 25 20:41:32 2011 UTC (20 months, 3 weeks ago) by thornton
Original Path: trunk

Add new mapping format from MCHits to TPCDigits to allow hits up to one complete volume before and after the current volume

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Revision 1292 - Directory Listing
Modified Thu Aug 25 12:04:19 2011 UTC (20 months, 3 weeks ago) by thornton
Original Path: trunk

Fixed typo. Use of lower case z where upper case Z should have been used.

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Revision 1291 - Directory Listing
Modified Wed Aug 24 21:00:45 2011 UTC (20 months, 3 weeks ago) by thornton
Original Path: trunk

Updated MCHit definition. Changed detSim modules to use new definition. Removed TPCRandomHits from Makefile.am because more thought will be needed to change the module to the new definition. Changed testGeoEVD.C to use new definitions while changing the .xml config files under build to now TPCDiffusion is run before TPCLatching. Also changed the particle transport simulation (Geant4) to handle new class.

With changing TrackId to MCTrackId, I updated the NiffteMCParticle class to do the same.

Did not go through all analysis macros, just testGeoEVD.C.

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Revision 1290 - Directory Listing
Modified Wed Aug 24 16:18:52 2011 UTC (20 months, 4 weeks ago) by rgbaker
Original Path: trunk

Remove usage of former TPCTrackFit objects DigitIncludeList and HitIncludeList
Instead, assume all hits and digits associated with a track are included in the track fit

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Revision 1289 - Directory Listing
Modified Tue Aug 23 18:48:10 2011 UTC (20 months, 4 weeks ago) by rgbaker
Original Path: trunk

Update persistent classes to remove obsolete information from track fits, store ADC values as float instead of int.

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Revision 1288 - Directory Listing
Modified Tue Aug 23 18:10:33 2011 UTC (20 months, 4 weeks ago) by rgbaker
Original Path: trunk

Remove "TrackParam" XZSlope YZSlope and Hit/Digit include/exclude lists from TPCTrackFit objects.  Associated updates to TPCTrackFitter and TPCKalman.

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Revision 1287 - Directory Listing
Modified Tue Aug 23 17:12:22 2011 UTC (20 months, 4 weeks ago) by rgbaker
Original Path: trunk

Update transient objects TPCDigit and TPCCluster to use double precision for ADC values, with associated changes to TPCSnapshotBuilder and TPCClusterFinder.
Note that persistent classes NiffteTPCDigit and NiffteTPCCluster have not yet been updated to store ADC values as float (implicit type conversion allows this to work for now) but will be updated in a subsequent revision.
More work on TPCDriftSpeedMaker...

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Revision 1286 - Directory Listing
Modified Tue Aug 23 15:41:14 2011 UTC (20 months, 4 weeks ago) by rrrosen
Original Path: trunk

Adding my ADC to energy conversion program.

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Revision 1285 - Directory Listing
Modified Mon Aug 22 22:09:01 2011 UTC (20 months, 4 weeks ago) by rgbaker
Original Path: trunk

Add new method to allow users to verify drift speed with GetDriftSpeed() method.

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Revision 1284 - Directory Listing
Modified Mon Aug 22 22:07:56 2011 UTC (20 months, 4 weeks ago) by rgbaker
Original Path: trunk

Drift Speed Calibration Module in nearly complete state
Note that this module is in the tpc/reco directory because
Modules in the tpc/calib directory are not being loaded in
the TPC Module Table and cannot be invoked.  (temporary
workaround until we figure out why...)

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Revision 1283 - Directory Listing
Modified Fri Aug 19 19:27:35 2011 UTC (21 months ago) by swatson
Original Path: trunk

Fixed an event builder bug that occured when runs were restarted (uninitialized data members).

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Revision 1282 - Directory Listing
Modified Thu Aug 18 23:06:29 2011 UTC (21 months ago) by swatson
Original Path: trunk

Fixed a problem with status file path handling.  The demux frontend now supports file:// paths with run number substitution for the status file.

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Revision 1281 - Directory Listing
Modified Thu Aug 18 22:34:44 2011 UTC (21 months ago) by verena
Original Path: trunk

corrected angle for random sampling, sqrt was missing in Line 118

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Revision 1280 - Directory Listing
Modified Thu Aug 18 15:59:17 2011 UTC (21 months ago) by rgbaker
Original Path: trunk

Simple macro to generate momentum component distributions for a fixed total momentum (=1) 
with uniform step sizes in cos(theta) and phi

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Revision 1279 - Directory Listing
Modified Wed Aug 17 19:01:06 2011 UTC (21 months ago) by rgbaker
Original Path: trunk

Add call to gROOT->ProcessLine to force-add PGSQL to the include path

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Revision 1278 - Directory Listing
Modified Wed Aug 17 00:08:56 2011 UTC (21 months ago) by rgbaker
Original Path: trunk

Fix typo in .rootlogon.C
Start implementation of Drift Speed calibration

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Revision 1277 - Directory Listing
Modified Tue Aug 16 22:19:27 2011 UTC (21 months ago) by swatson
Original Path: trunk

Small interface fixes to avoid a couple of unnecessary redraws.

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Revision 1276 - Directory Listing
Modified Tue Aug 16 18:41:44 2011 UTC (21 months ago) by rgbaker
Original Path: trunk

Add new function to geometry objects to convert from Vol,Z to bucket number
Add explicit type conversion to Vol,bucket to z conversion

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Revision 1275 - Directory Listing
Modified Tue Aug 16 16:52:46 2011 UTC (21 months ago) by thornton
Original Path: trunk

Another compiling fix

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Revision 1274 - Directory Listing
Modified Tue Aug 16 16:35:54 2011 UTC (21 months ago) by thornton
Original Path: trunk

Fixed compiling errors

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Revision 1273 - Directory Listing
Modified Mon Aug 15 14:42:16 2011 UTC (21 months ago) by swatson
Original Path: trunk

Fixed an error where card ID 0x0 was found when parsing an empty list of card IDs.

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Revision 1272 - Directory Listing
Modified Mon Aug 15 00:22:26 2011 UTC (21 months, 1 week ago) by rgbaker
Original Path: trunk

Add PGSQL to include path for root.

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Revision 1271 - Directory Listing
Modified Sun Aug 14 06:07:12 2011 UTC (21 months, 1 week ago) by rgbaker
Original Path: trunk

Clean up handling of NiffteGeometryMap within NiffteCalibManager
Add libdb to the default .rootlogon.C

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Revision 1270 - Directory Listing
Modified Sat Aug 13 23:40:22 2011 UTC (21 months, 1 week ago) by rgbaker
Original Path: trunk

Revert latest change - Still some issues with management of NiffteGeometryMap singleton.

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Revision 1269 - Directory Listing
Modified Sat Aug 13 20:25:03 2011 UTC (21 months, 1 week ago) by rgbaker
Original Path: trunk

Fixed dependency issue, so now all NiffteGeometryMap instantiation is forced to go through NiffteCalibManager (transparent to user)

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Revision 1268 - Directory Listing
Modified Sat Aug 13 19:25:25 2011 UTC (21 months, 1 week ago) by rgbaker
Original Path: trunk

NiffteGeometryMap singleton is now managed by NiffteCalibManager
Users should obtain a pointer to the (singleton) NiffteGeometryMap by
first getting a pointer to the (singleton) NiffteCalibManager and
then calling:

NiffteCalibManager::GeometryMap()

which will return a pointer to the managed NiffteGeometryMap object.

Makefile changes associated with this fix (NiffteGeometryMap is now
dependent on NiffteCalibManager which depends on pgsql include files)

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Revision 1267 - Directory Listing
Modified Fri Aug 12 23:56:12 2011 UTC (21 months, 1 week ago) by swatson
Original Path: trunk

Fixed an issue that prevented "process every Nth event" from working with raw input files.

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Revision 1266 - Directory Listing
Modified Fri Aug 12 19:50:54 2011 UTC (21 months, 1 week ago) by rgbaker
Original Path: trunk

Move all Calibration connection (db or file) functionality into NiffteCalibManager
Allow Calibration objects to fail gracefully when there is a problem reading from file
Management of NiffteGeometryMap encapsulated in NiffteCalibManager

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Revision 1265 - Directory Listing
Modified Fri Aug 12 17:52:30 2011 UTC (21 months, 1 week ago) by swatson
Original Path: trunk

Changed configuration string init to improve compatibility with different Midas versions.

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Revision 1264 - Directory Listing
Modified Fri Aug 12 17:42:49 2011 UTC (21 months, 1 week ago) by thornton
Original Path: trunk

Added the probability to pile ups when running TPCAlphaDecay, G4FissFragGen, or SpontaneousDecay. The number of decays that occur per event is passed on the source intensity, drift time and a Poisson distribution.

The current drift time is calculated by taking the drift velocity of the electrons and multiplying it by the length from the bottom of the cathode plane to the top of the pad plane.

The default source intensity is set to 0 and can be changed in the config macro with the command

/tpcParameter/SeSourceIntensity Value Unit

NOTE: All events start at time = 0, but their positions are random depending on the source parameters.

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Revision 1263 - Directory Listing
Modified Fri Aug 12 17:08:41 2011 UTC (21 months, 1 week ago) by rgbaker
Original Path: trunk

Simplify instantiation of NiffteCalibManager, start work to allow user to read some, but not all, calib constants from file.

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Revision 1262 - Directory Listing
Modified Fri Aug 12 16:41:41 2011 UTC (21 months, 1 week ago) by rgbaker
Original Path: trunk

Clean up some MsgInfo, std::cout(!) and MsgError statements

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Revision 1261 - Directory Listing
Modified Thu Aug 11 22:13:50 2011 UTC (21 months, 1 week ago) by bwendt
Original Path: trunk

Added spontaneous decay sampling module. Solved a few issues with G4FissionFragmentGenerator. Fixed polar sampling in TPCAlphaDecay. Update hadlist.gmk to use both new and old low energy packages with G4FissionFragmentGenerator.

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Revision 1260 - Directory Listing
Modified Thu Aug 11 22:05:18 2011 UTC (21 months, 1 week ago) by thornton
Original Path: trunk

Changed the commands to place the source, source backing, and source plating in the TPC to PlaceSourceMaterial, PlaceSourceBacking, and PlaceSourcePlating.

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Revision 1259 - Directory Listing
Modified Wed Aug 10 20:33:49 2011 UTC (21 months, 1 week ago) by thornton
Original Path: trunk

Found another file that did not get updated.

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Revision 1258 - Directory Listing
Modified Wed Aug 10 20:30:08 2011 UTC (21 months, 1 week ago) by thornton
Original Path: trunk

This did not get included in the last Geant4 update, that I did.

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Revision 1257 - Directory Listing
Modified Tue Aug 9 23:53:48 2011 UTC (21 months, 1 week ago) by swatson
Original Path: trunk

Small change to load microseconds from raw v1 blocks into the memory resident event header.

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Revision 1256 - Directory Listing
Modified Tue Aug 9 22:44:59 2011 UTC (21 months, 1 week ago) by thornton
Original Path: trunk

Now the size and number of buckets per volume is calculated by the drift speed and clock frequency, both of which can be change with the config macro.

An example macro was given to show how to do this, macros/ChangingBucketSizeConfig.mac

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Revision 1255 - Directory Listing
Modified Tue Aug 9 20:20:43 2011 UTC (21 months, 1 week ago) by thornton
Original Path: trunk

Forgot to update the source example macro

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Revision 1254 - Directory Listing
Modified Tue Aug 9 20:20:01 2011 UTC (21 months, 1 week ago) by thornton
Original Path: trunk

Added the source backing and source plating (the small amount of gold on top) for the button source. Added a flag that determines if the source material, source backing, and source plating are added to the geometry or not. All are default to not show up.

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Revision 1253 - Directory Listing
Modified Tue Aug 9 00:00:18 2011 UTC (21 months, 1 week ago) by rgbaker
Original Path: trunk

Connect calibration constants objects to detsim classes

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Revision 1252 - Directory Listing
Modified Mon Aug 8 23:09:11 2011 UTC (21 months, 1 week ago) by rgbaker
Original Path: trunk

Final (hopefully) integration of calibrated drift speed into geometry and reconstruction

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Revision 1251 - Directory Listing
Modified Mon Aug 8 23:06:12 2011 UTC (21 months, 1 week ago) by bwendt
Original Path: trunk

Corrected an slight probability of a seg. fault from neutrons. Added support for printing fission information to a .dat file. Corrected some warnings generated with older compilers.

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Revision 1250 - Directory Listing
Modified Mon Aug 8 22:25:12 2011 UTC (21 months, 1 week ago) by thornton
Original Path: trunk

Added the source to the detector by default. The source id, position, radius, depth and density are all set in TPCVariableValues. The defaults are 98252 (Cf252), (0.5cm, sqrt(3)/2.cm,0.05cm), 0.25cm, 0.05cm, 15.1 g/cm3 respectively (based of the Cf252 button source). All parameters can be changed in the config macro.

With the source, more events need to be run because some tracks do not leave the source depending on volume and density.

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Revision 1249 - Directory Listing
Modified Mon Aug 8 21:05:38 2011 UTC (21 months, 1 week ago) by rgbaker
Original Path: trunk

Continued integration of DriftSpeed constant object into framework and reco modules

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Revision 1248 - Directory Listing
Modified Mon Aug 8 15:25:25 2011 UTC (21 months, 1 week ago) by thornton
Original Path: trunk

Now an event created by TPCAlphaDecay will be stored in a .dat file. The user can change the default file name by using 

/TPC/EvGen/DatOutputFileName <filename>

in the fun macro before /run/beamON

The default naming scheme is

Geant4-ZZZAAA-<DecayProcess>.dat

If the file does not exists, it will be created and appended to.
If it does exists then it will be appended to.

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Revision 1247 - Directory Listing
Modified Fri Aug 5 16:01:13 2011 UTC (21 months, 2 weeks ago) by thornton
Original Path: trunk

Fixed small issue in calculating which alpha to use.

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Revision 1246 - Directory Listing
Modified Fri Aug 5 14:28:16 2011 UTC (21 months, 2 weeks ago) by rgbaker
Original Path: trunk

Add new calibration object, TPCDriftSpeedData and associated classes
Modify existing modules and infrastructure to connect with new objects

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Revision 1245 - Directory Listing
Modified Thu Aug 4 23:14:16 2011 UTC (21 months, 2 weeks ago) by bwendt
Original Path: trunk

Forgot to include the sample macros.

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Revision 1244 - Directory Listing
Modified Thu Aug 4 23:12:32 2011 UTC (21 months, 2 weeks ago) by bwendt
Original Path: trunk

Added example macros for using the G4FissionFragmentGenerator. Added capability to randomize fission location in the source. Updated momentum balancing in the fission generation code.

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Revision 1243 - Directory Listing
Modified Thu Aug 4 22:52:47 2011 UTC (21 months, 2 weeks ago) by thornton
Original Path: trunk

Added the ability to set a cut on angles at which the alphas are allowed to shot off at. Also added a run macro demonstrating how to run the TPCAlphaDecay event generator

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Revision 1242 - Directory Listing
Modified Thu Aug 4 22:06:41 2011 UTC (21 months, 2 weeks ago) by thornton
Original Path: trunk

Added a data file with a lot of different isotopes alpha decay emission probabilities. TPCAlphaDecay is a class that handles any isotope the user sets in the config macro. If the isotope is not found Geant4 will terminate.

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Revision 1241 - Directory Listing
Modified Thu Aug 4 19:20:45 2011 UTC (21 months, 2 weeks ago) by bwendt
Original Path: trunk

Adding G4FissionFragmentGenerator and data files. Still checking validity of commented section in TPCIonPhysics.cc. Will add sample macro later this afternoon.

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Revision 1240 - Directory Listing
Modified Thu Aug 4 18:55:16 2011 UTC (21 months, 2 weeks ago) by thornton
Original Path: trunk

Fixed default values for pressure and density. Forgot to multiply by the unit definition in the last update.

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Revision 1239 - Directory Listing
Modified Thu Aug 4 16:56:05 2011 UTC (21 months, 2 weeks ago) by thornton
Original Path: trunk

Forgot to add on last update

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Revision 1238 - Directory Listing
Modified Thu Aug 4 14:52:23 2011 UTC (21 months, 2 weeks ago) by thornton
Original Path: trunk

Added the source parameters and the ability to set these parameters in the config macro

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Revision 1237 - Directory Listing
Modified Thu Aug 4 01:15:06 2011 UTC (21 months, 2 weeks ago) by lsnyder
Original Path: trunk

updated Cf-252 alpha and fragment generators to correct a non-uniformity in the source

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Revision 1236 - Directory Listing
Modified Wed Aug 3 23:46:58 2011 UTC (21 months, 2 weeks ago) by swatson
Original Path: trunk

Fixed a bug in parsing the list of enabled cards.  In some cases, the last card ID was dropped.

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Revision 1235 - Directory Listing
Modified Tue Aug 2 23:52:11 2011 UTC (21 months, 2 weeks ago) by thornton
Original Path: trunk

Added alpha low energy inelastic process to pManager

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Revision 1234 - Directory Listing
Modified Tue Aug 2 21:56:41 2011 UTC (21 months, 2 weeks ago) by thornton
Original Path: trunk

Copied Luke's Cf252 alpha decay macro into a generalized alpha decay class that can be expanded later for more isotope. The class does not interface with any messengers at the moment. When the G4FissionGenerator that Brycen is working on gets implemented, then this one will be also.

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Revision 1233 - Directory Listing
Modified Tue Aug 2 20:52:25 2011 UTC (21 months, 2 weeks ago) by swatson
Original Path: trunk

Removed one more unnecessary instance of -I$(includedir).

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Revision 1232 - Directory Listing
Modified Tue Aug 2 20:45:32 2011 UTC (21 months, 2 weeks ago) by swatson
Original Path: trunk

Removed $(includedir) from include path to improve build (search for headers in source dirs instead of install dirs).

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Revision 1231 - Directory Listing
Modified Tue Aug 2 16:17:51 2011 UTC (21 months, 2 weeks ago) by thornton
Original Path: trunk

Most of the changes are including and updating Doxygen comments.

Inside of TPCDetectorConstruction, I as able to set the step limit based off the radiation length of the material defined for the logical volume. Because some of the radiation lengths can be on the order of kilometers, the step size is equal to the radiation length divided by 10 times the Geant4 definition of a kilometer. This makes the Geant4 simulation run slower.

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Revision 1230 - Directory Listing
Modified Mon Aug 1 02:36:59 2011 UTC (21 months, 3 weeks ago) by thornton
Original Path: trunk

Fixed naming convention and potential segmentation fault

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Revision 1229 - Directory Listing
Modified Sun Jul 31 21:17:53 2011 UTC (21 months, 3 weeks ago) by sharma
Original Path: trunk

Removed debug statement

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Revision 1228 - Directory Listing
Modified Sun Jul 31 04:24:54 2011 UTC (21 months, 3 weeks ago) by sharma
Original Path: trunk

Added another parameter for the Hough Transform - DigitSharing. Should only be enabled for events with a large number of alphas that could intersect

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Revision 1227 - Directory Listing
Modified Sat Jul 30 20:15:35 2011 UTC (21 months, 3 weeks ago) by swatson
Original Path: trunk

A few build improvements (prefer headers and libs from build directories instead of install directories).

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Revision 1226 - Directory Listing
Modified Fri Jul 29 22:03:40 2011 UTC (21 months, 3 weeks ago) by swatson
Original Path: trunk

Fixed a segfault.

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Revision 1225 - Directory Listing
Modified Thu Jul 28 18:49:09 2011 UTC (21 months, 3 weeks ago) by thornton
Original Path: trunk

This is my analysis macro I have been using to calculate the z and xy widths of a track

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Revision 1224 - Directory Listing
Modified Tue Jul 26 22:00:50 2011 UTC (21 months, 3 weeks ago) by jhumphrey
Original Path: trunk

Added a FarZ removal configuration option. Default is on.

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Revision 1223 - Directory Listing
Modified Tue Jul 26 19:55:57 2011 UTC (21 months, 3 weeks ago) by thornton
Original Path: trunk

Added doxygen commits to constructors, deconstrutors and public functions. Private functions in TPCDiffusion are done also.

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Revision 1222 - Directory Listing
Modified Tue Jul 26 16:49:09 2011 UTC (21 months, 3 weeks ago) by thornton
Original Path: trunk

Added ability to set the number of standard deviations to go before pad is considered out of range for diffusion. Default is equal to 3.

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Revision 1221 - Directory Listing
Modified Tue Jul 26 15:29:20 2011 UTC (21 months, 3 weeks ago) by swatson
Original Path: trunk

Updated formatting for printing out 64-bit integers.

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Revision 1220 - Directory Listing
Modified Tue Jul 26 00:46:50 2011 UTC (21 months, 3 weeks ago) by mheffner
Original Path: trunk

removed papers from the public svn

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Revision 1219 - Directory Listing
Modified Mon Jul 25 23:24:18 2011 UTC (21 months, 3 weeks ago) by thornton
Original Path: trunk

Changed MAGBOLTZ look up table interface to read in a .csv file instead of a .tsv file. Got rid of some unused functions and couts.

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Revision 1218 - Directory Listing
Modified Mon Jul 25 17:31:37 2011 UTC (21 months, 3 weeks ago) by thornton
Original Path: trunk

Fix small errors, and delete a pointer.

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Revision 1217 - Directory Listing
Modified Mon Jul 25 17:23:25 2011 UTC (21 months, 3 weeks ago) by thornton
Original Path: trunk

Changed diffusion to spread like a 3D Gaussian ellipse instead of a Gaussian circle and a Gaussian Line. Removed some unnecessary functions and add functions (that are committed out) that might be needed if the covariance between transverse and longitudinal diffusion constants does not equal zero.

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Revision 1216 - Directory Listing
Modified Thu Jul 21 22:30:15 2011 UTC (22 months ago) by swatson
Original Path: trunk

Small improvements for drawing tracks.

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Revision 1215 - Directory Listing
Modified Thu Jul 21 22:07:56 2011 UTC (22 months ago) by sharma
Original Path: trunk

Updated H/K parameters for high rate and low rate runs

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Revision 1214 - Directory Listing
Modified Thu Jul 21 19:46:16 2011 UTC (22 months ago) by sharma
Original Path: trunk

Increased gap length, should help reconstruct tracks that traverse bad pixels

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Revision 1213 - Directory Listing
Modified Thu Jul 21 19:33:06 2011 UTC (22 months ago) by verena
Original Path: trunk

appoint z-direction and start and end point based on distance from origin (target)
 

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Revision 1212 - Directory Listing
Modified Thu Jul 21 19:31:27 2011 UTC (22 months ago) by verena
Original Path: trunk

lowered chisquare threshold for trad digits to avoid badly shaped signals and segfaults

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Revision 1211 - Directory Listing
Modified Thu Jul 21 19:08:57 2011 UTC (22 months ago) by rgbaker
Original Path: trunk

New very simplified example macro with lots of comments to help new users get started
with the analysis framework

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Revision 1210 - Directory Listing
Modified Thu Jul 21 14:00:17 2011 UTC (22 months ago) by thornton
Original Path: trunk

Removed unusable gas macros and added their counterpart config gas macros. Removed dependencies of the old macros and changed gas name inside of TPCDetectorConstruction

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Revision 1209 - Directory Listing
Modified Thu Jul 21 01:31:20 2011 UTC (22 months ago) by rgbaker
Original Path: trunk

Add "ExtraBuckets" parameter for compatibility with new TPCSnapshotBuilder option

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Revision 1208 - Directory Listing
Modified Thu Jul 21 01:30:48 2011 UTC (22 months ago) by rgbaker
Original Path: trunk

Add "ExtraBuckets" parameter to allow SnapshotBuilder to expand z-range of TPC digits

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Revision 1207 - Directory Listing
Modified Thu Jul 21 00:32:35 2011 UTC (22 months ago) by rgbaker
Original Path: trunk

Fix typo on line 758

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Revision 1206 - Directory Listing
Modified Wed Jul 20 20:57:10 2011 UTC (22 months ago) by sharma
Original Path: trunk

Fixed bug with smoothing. 

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Revision 1205 - Directory Listing
Modified Wed Jul 20 16:41:33 2011 UTC (22 months ago) by swatson
Original Path: trunk

Bug in ADC weighting (max should have been min).

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Revision 1204 - Directory Listing
Modified Wed Jul 20 14:00:34 2011 UTC (22 months ago) by thornton
Original Path: trunk

Updated output to match the input Geant4 is expecting

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Revision 1203 - Directory Listing
Modified Tue Jul 19 16:55:19 2011 UTC (22 months ago) by sharma
Original Path: trunk

Changed how digits are weighed in PCA

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Revision 1202 - Directory Listing
Modified Tue Jul 19 16:06:37 2011 UTC (22 months ago) by thornton
Original Path: trunk

Removed references to modules just removed in last update

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Revision 1201 - Directory Listing
Modified Tue Jul 19 16:03:12 2011 UTC (22 months ago) by thornton
Original Path: trunk

Removed unused modules in detector simulation

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Revision 1200 - Directory Listing
Modified Tue Jul 19 14:51:44 2011 UTC (22 months ago) by thornton
Original Path: trunk

Removed unused simulation files

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Revision 1199 - Directory Listing
Modified Tue Jul 19 06:59:46 2011 UTC (22 months ago) by sharma
Original Path: trunk

Transformed digits are no longer stored in track

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Revision 1198 - Directory Listing
Modified Tue Jul 19 00:03:26 2011 UTC (22 months ago) by swatson
Original Path: trunk

Fixed another leak.

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Revision 1197 - Directory Listing
Modified Mon Jul 18 23:17:12 2011 UTC (22 months ago) by swatson
Original Path: trunk

Fixed a several memory leaks.

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Revision 1196 - Directory Listing
Modified Mon Jul 18 22:58:55 2011 UTC (22 months ago) by thornton
Original Path: trunk

Changed ReadFromFile to use csv input file instead of tsv.

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Revision 1195 - Directory Listing
Modified Mon Jul 18 22:43:38 2011 UTC (22 months ago) by thornton
Original Path: trunk

Changed argon and methane gas names to match name format given by Magboltz

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Revision 1194 - Directory Listing
Modified Mon Jul 18 21:52:36 2011 UTC (22 months ago) by rgbaker
Original Path: trunk

Allow user to force constants objects to be read from a file

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Revision 1193 - Directory Listing
Modified Mon Jul 18 21:41:17 2011 UTC (22 months ago) by sharma
Original Path: trunk

Fixed direction vector calculations

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Revision 1192 - Directory Listing
Modified Mon Jul 18 20:27:19 2011 UTC (22 months ago) by sharma
Original Path: trunk

Updated parameters for hough kalman tracking

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Revision 1191 - Directory Listing
Modified Mon Jul 18 16:22:03 2011 UTC (22 months ago) by thornton
Original Path: trunk

Added variables needed for MAGBOLTZ look up table. Added ability to find an exact entry in the look up table (table not provided, on process of making).

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Revision 1190 - Directory Listing
Modified Mon Jul 18 15:50:17 2011 UTC (22 months ago) by thornton
Original Path: trunk

Added function ReadFromFile to read in calibrations from file potentially needed by developers. (Complies but has not been tested, NiffteTaskManager needs to be changed to add the additional file read in)

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Revision 1189 - Directory Listing
Modified Mon Jul 18 06:33:07 2011 UTC (22 months ago) by sharma
Original Path: trunk

Updated function prototype for 'DoHough' function 

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Revision 1188 - Directory Listing
Modified Mon Jul 18 06:01:19 2011 UTC (22 months ago) by sharma
Original Path: trunk

Some improvements to Hough

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Revision 1187 - Directory Listing
Modified Fri Jul 15 23:47:54 2011 UTC (22 months ago) by swatson
Original Path: trunk

Drawing improvements for tracks with multiple fits (colors, names, etc.).  Digits belonging to a track are hidden by default (visibility can be toggled under /Event/RecoTracks in the Eve tab).

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Revision 1186 - Directory Listing
Modified Fri Jul 15 17:36:51 2011 UTC (22 months, 1 week ago) by rgbaker
Original Path: trunk

Force job termination when there is a problem accessing the database unless the user has set an environment variable DB_FAIL_OK
The value of this variable is not checked, just the fact that it is set.
To allow continuation regardless of DB status:

setenv DB_FAIL_OK

To turn this behavior off again logout/login again or:

unsetenv DB_FAIL_OK

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Revision 1185 - Directory Listing
Modified Fri Jul 15 15:58:21 2011 UTC (22 months, 1 week ago) by swatson
Original Path: trunk

Changed Doxygen options to avoid some directories and source files.

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Revision 1184 - Directory Listing
Modified Thu Jul 14 22:38:36 2011 UTC (22 months, 1 week ago) by mheffner
Original Path: trunk

first commit of the paper

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Revision 1183 - Directory Listing
Modified Thu Jul 14 21:59:28 2011 UTC (22 months, 1 week ago) by mheffner
Original Path: trunk

added a directory for papers

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Revision 1182 - Directory Listing
Modified Thu Jul 14 17:05:50 2011 UTC (22 months, 1 week ago) by swatson
Original Path: trunk

Several performance improvements that do not change results.

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Revision 1181 - Directory Listing
Modified Wed Jul 13 23:53:09 2011 UTC (22 months, 1 week ago) by jhumphrey
Original Path: trunk

Removed the angle test from makeAverageHits

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Revision 1180 - Directory Listing
Modified Wed Jul 13 18:04:52 2011 UTC (22 months, 1 week ago) by jhumphrey
Original Path: trunk

Fixed compile errors with fitHit. Added MakeDigitHit function which is similar to MakeDigitHits, but only does one digit. Changed direction output for lsq, which now gives much better results.

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Revision 1179 - Directory Listing
Modified Wed Jul 13 09:19:16 2011 UTC (22 months, 1 week ago) by sharma
Original Path: trunk

Fixed covariance calculations in Hough Transform
Added additional parameter HoughDiffusion which is similar to HoughRadius only larger.
Charge can now be shared among tracks

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Revision 1178 - Directory Listing
Modified Tue Jul 12 21:30:56 2011 UTC (22 months, 1 week ago) by thornton
Original Path: trunk

Added ability to use new or old Geant4 low energy packages depending on the eviromental variable NIFFTE_G4_USE_OLD_LOWENERGY. If NIFFTE_G4_USE_OLD_LOWENERGY is set then the user wants to use the old low energy packages. Set the variable if using geant4.9.2 or older. 

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Revision 1177 - Directory Listing
Modified Tue Jul 12 17:27:28 2011 UTC (22 months, 1 week ago) by swatson
Original Path: trunk

Removed some data and image files.

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Revision 1176 - Directory Listing
Modified Tue Jul 12 17:20:03 2011 UTC (22 months, 1 week ago) by swatson
Original Path: trunk

Removed some large data files.

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Revision 1175 - Directory Listing
Modified Mon Jul 11 19:27:19 2011 UTC (22 months, 1 week ago) by thornton
Original Path: trunk

An old version get committed last time, here is the one that should have been added

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Revision 1174 - Directory Listing
Modified Mon Jul 11 15:53:06 2011 UTC (22 months, 1 week ago) by swatson
Original Path: trunk

Fixed some compiler warnings related to large integer literals on 32-bit Linux.  Added record count summary to edaq_raw_dump.

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Revision 1173 - Directory Listing
Modified Sun Jul 10 23:00:04 2011 UTC (22 months, 1 week ago) by thornton
Original Path: trunk

Changed how geometry constants are defined. All geometry and gas constants are defined in TPCVariableValues including the default gas. Predefined functions can be called in the config macro (option -c) to change some of these values. TPCOutputManager grabs geometry version from TPCVariableValues and is capable of obtaining other constants that we might want to pass through the TPC. Documentation is on the wiki on how to run with the new setup.

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Revision 1172 - Directory Listing
Modified Sat Jul 9 00:40:05 2011 UTC (22 months, 1 week ago) by swatson
Original Path: trunk

Fixed "can't find testexternals.c ..." build error.

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Revision 1171 - Directory Listing
Modified Fri Jul 8 23:45:04 2011 UTC (22 months, 1 week ago) by rgbaker
Original Path: trunk

Update geant4 version in setup.csh

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Revision 1170 - Directory Listing
Modified Fri Jul 8 23:33:19 2011 UTC (22 months, 1 week ago) by swatson
Original Path: trunk

Added read support for the version 1 waveform event blocks created by edaq_eve_build.

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Revision 1169 - Directory Listing
Modified Fri Jul 8 16:00:03 2011 UTC (22 months, 2 weeks ago) by swatson
Original Path: trunk

Modified event builder to skip busy and buffer status records.  This is a temporary workaround.  Waveform events should be okay now.

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Revision 1168 - Directory Listing
Modified Thu Jul 7 23:15:04 2011 UTC (22 months, 2 weeks ago) by jhumphrey
Original Path: trunk

Reconstructed track angles fixed. Quality variable for fwd/bck fits changed.

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Revision 1167 - Directory Listing
Modified Thu Jul 7 23:03:32 2011 UTC (22 months, 2 weeks ago) by rgbaker
Original Path: trunk

Simple macro to plot zoomed-in view of best vertex plots

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Revision 1166 - Directory Listing
Modified Thu Jul 7 23:01:57 2011 UTC (22 months, 2 weeks ago) by rgbaker
Original Path: trunk

Haven't checked these in for a while, so my working copies have evolved a bit...

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Revision 1165 - Directory Listing
Modified Thu Jul 7 18:59:11 2011 UTC (22 months, 2 weeks ago) by swatson
Original Path: trunk

Added invalid CDR detection.

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Revision 1164 - Directory Listing
Modified Wed Jul 6 17:17:36 2011 UTC (22 months, 2 weeks ago) by jklay
Original Path: trunk

updated padcalib executable to read constants from a simple ascii file.  Example file included

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Revision 1163 - Directory Listing
Modified Wed Jul 6 06:20:05 2011 UTC (22 months, 2 weeks ago) by sharma
Original Path: trunk

Updated Kalman Filter, now smoothed (backwards) track fit is also calculated and added to the track. 
New parameters added to the config files, only for the Kalman module:
# Blowup Factor - Rescales initial covariance matrices for the Kalman
# Process Noise - Noise expected from Multiple Scattering, since we expect to see mostly straight tracks it is set to a low value of 0.000106 cm^2 per digit
# Measurement Noise -  Measurement noise associated with with each digit's position
# ADC Weight - ADCWeight x (ADC of digit)/MaxADC is subtracted from the measurement noise. This allows digits with higher ADC values to have a higher pull on the fit

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Revision 1162 - Directory Listing
Modified Tue Jul 5 07:16:56 2011 UTC (22 months, 2 weeks ago) by rgbaker
Original Path: trunk

Replaced SetInFileName(const char*) method for NiffteRootIO because many existing analysis macros use this method.

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Revision 1161 - Directory Listing
Modified Sun Jul 3 03:34:59 2011 UTC (22 months, 2 weeks ago) by jhumphrey
Original Path: trunk

Fixed matrix calculations after gsl_linalg_SV_decomp. Modified LSQ algorithm to extend fit line. Changed 'Goodnessoffit' point removal. Added matrix/vector print for debug.

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Revision 1160 - Directory Listing
Modified Thu Jun 30 21:23:04 2011 UTC (22 months, 3 weeks ago) by jklay
Original Path: trunk

add preamp serial number to etherdaq card location table

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Revision 1159 - Directory Listing
Modified Thu Jun 30 18:39:39 2011 UTC (22 months, 3 weeks ago) by swatson
Original Path: trunk

EDAQEventBuilder now uses wall clock timestamps from data instead of runtime date for begin/end of raw file headers.  Fixed a null ptr bug in feEDAQDemux.

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Revision 1158 - Directory Listing
Modified Thu Jun 30 17:07:44 2011 UTC (22 months, 3 weeks ago) by swatson
Original Path: trunk

feEDAQDemux now calculates the "Warmest" recently measured EtherDAQ temperature.  This value can be monitored for alarms.

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Revision 1157 - Directory Listing
Modified Thu Jun 30 00:20:38 2011 UTC (22 months, 3 weeks ago) by swatson
Original Path: trunk

Added EtherDAQ FPGA temperature monitoring to feEDAQDemux.

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Revision 1156 - Directory Listing
Modified Wed Jun 29 20:26:07 2011 UTC (22 months, 3 weeks ago) by jklay
Original Path: trunk

updates to task manager for running without connection to database.  Appropriate warning message is included in log output if db connection is not established

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Revision 1155 - Directory Listing
Modified Wed Jun 29 19:39:54 2011 UTC (22 months, 3 weeks ago) by swatson
Original Path: trunk

Fixed null ptr issue in feEDAQEventBuilder.  Added some diagnostic printouts to EDAQEventBuilder.

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Revision 1154 - Directory Listing
Modified Wed Jun 29 06:58:41 2011 UTC (22 months, 3 weeks ago) by rgbaker
Original Path: trunk

New Config file for full reconstruction using FYN and 3D LSQ

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Revision 1153 - Directory Listing
Modified Tue Jun 28 13:05:13 2011 UTC (22 months, 3 weeks ago) by jhumphrey
Original Path: trunk

Added ADC weights and chi square/Dof to Least Squares

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Revision 1152 - Directory Listing
Modified Mon Jun 27 21:31:25 2011 UTC (22 months, 3 weeks ago) by swatson
Original Path: trunk

Input/output file handling updates for the fast frontends.

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Revision 1151 - Directory Listing
Modified Mon Jun 27 14:02:52 2011 UTC (22 months, 3 weeks ago) by swatson
Original Path: trunk

Various fixes to improve Midas integration.

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Revision 1150 - Directory Listing
Modified Fri Jun 24 20:57:47 2011 UTC (22 months, 4 weeks ago) by dtomkins
Original Path: trunk

final revisions (DT) to event builder
some Midasizations of demux; however, monitor mode now makes bad assumptions

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Revision 1149 - Directory Listing
Modified Fri Jun 24 15:14:49 2011 UTC (22 months, 4 weeks ago) by swatson
Original Path: trunk

Added/updated some TODOs.

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Revision 1148 - Directory Listing
Modified Thu Jun 23 19:29:02 2011 UTC (22 months, 4 weeks ago) by swatson
Original Path: trunk

Added stats handling (number of events and bytes written).  Fixed a null pointer bug.

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Revision 1147 - Directory Listing
Modified Thu Jun 23 00:12:25 2011 UTC (22 months, 4 weeks ago) by swatson
Original Path: trunk

Merged some event builder frontend changes with some updates from Daniel.

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Revision 1146 - Directory Listing
Modified Wed Jun 22 19:31:08 2011 UTC (22 months, 4 weeks ago) by swatson
Original Path: trunk

Added skeleton MIDAS frontend for the new event builder.

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Revision 1145 - Directory Listing
Modified Wed Jun 22 06:20:19 2011 UTC (23 months ago) by dtomkins
Original Path: trunk

changes to EventBuilder that reduce dropped packets

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Revision 1144 - Directory Listing
Modified Tue Jun 21 01:09:03 2011 UTC (23 months ago) by rgbaker
Original Path: trunk

Fix algorithm for adding "back hits" to tracks

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Revision 1143 - Directory Listing
Modified Mon Jun 20 21:43:40 2011 UTC (23 months ago) by rgbaker
Original Path: trunk

In TPCTrackFinder, sort hits by volume # instead of separating based on +/- z coordinte.
In TPCTrackFitter, save maximum chisq from either the xz or yz fit as the Track Quality parameter

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Revision 1142 - Directory Listing
Modified Mon Jun 20 19:33:27 2011 UTC (23 months ago) by jklay
Original Path: trunk

revert to nuclear base dir in setup.sh

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Revision 1141 - Directory Listing
Modified Fri Jun 17 21:50:35 2011 UTC (23 months ago) by dtomkins
Original Path: trunk

Midas-shaped new event builder.

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Revision 1140 - Directory Listing
Modified Fri Jun 17 17:17:26 2011 UTC (23 months ago) by swatson
Original Path: trunk

Added MIDAS custom HV control web page with online docs.

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Revision 1139 - Directory Listing
Modified Thu Jun 16 21:38:02 2011 UTC (23 months ago) by dtomkins
Original Path: trunk

Mostly completed new event builder and testing tools.

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Revision 1138 - Directory Listing
Modified Thu Jun 16 18:47:36 2011 UTC (23 months ago) by swatson
Original Path: trunk

Attempt to strip "-I/usr/include" from root-cint commands.  I'm not sure if this method is adequately portable (might require gnumake).

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Revision 1137 - Directory Listing
Modified Wed Jun 15 21:56:00 2011 UTC (23 months ago) by rgbaker
Original Path: trunk

Add fQuality variable and accessor methods to TPCTrackFit
Update TPCLeastSquaresFit to store "GoodnessOfFit" as fQuality

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Revision 1136 - Directory Listing
Modified Wed Jun 15 20:28:24 2011 UTC (23 months ago) by swatson
Original Path: trunk

Added an environment variable flag to control the LowEnergy package selection.  This is not used during compilation yet.

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Revision 1135 - Directory Listing
Modified Wed Jun 15 18:20:20 2011 UTC (23 months ago) by rgbaker
Original Path: trunk

Add kFit3DLSQ, kFit3DLSQBackwards constants to TPCFitType_t enum
Save fwd/bkwd fit parameters (Start/End points and direction vector) in TPCLeastSquaresFit module

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Revision 1134 - Directory Listing
Modified Wed Jun 15 00:58:57 2011 UTC (23 months, 1 week ago) by sharma
Original Path: trunk

Changed how it weighs the digits

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Revision 1133 - Directory Listing
Modified Tue Jun 14 01:17:56 2011 UTC (23 months, 1 week ago) by rgbaker
Original Path: trunk

Find Start and End points of track, save preliminary info for fit

Update fitting algorithm to use double precision instead of float

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Revision 1132 - Directory Listing
Modified Mon Jun 13 21:39:52 2011 UTC (23 months, 1 week ago) by sharma
Original Path: trunk

Fixed some memory leaks

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Revision 1131 - Directory Listing
Modified Mon Jun 13 17:25:33 2011 UTC (23 months, 1 week ago) by sharma
Original Path: trunk

Fixed extended initialization list

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Revision 1130 - Directory Listing
Modified Mon Jun 13 06:44:35 2011 UTC (23 months, 1 week ago) by sharma
Original Path: trunk

Bug fixes and cleaned up some debug statements

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Revision 1129 - Directory Listing
Modified Fri Jun 10 21:44:15 2011 UTC (23 months, 1 week ago) by swatson
Original Path: trunk

A few fixes for "make dist".

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Revision 1128 - Directory Listing
Modified Fri Jun 10 21:09:29 2011 UTC (23 months, 1 week ago) by sharma
Original Path: trunk

Changed nhits to npoints

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Revision 1127 - Directory Listing
Modified Fri Jun 10 17:59:08 2011 UTC (23 months, 1 week ago) by dtowell
Original Path: trunk

Updated to using data/EDCRRawFileIO.h in eventbuild

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Revision 1126 - Directory Listing
Modified Fri Jun 10 17:12:25 2011 UTC (23 months, 1 week ago) by hqu
Original Path: trunk

bug fix and time change with timezone

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Revision 1125 - Directory Listing
Modified Fri Jun 10 15:41:59 2011 UTC (23 months, 1 week ago) by dtowell
Original Path: trunk

Inititial commit of new eventbuilder

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Revision 1124 - Directory Listing
Modified Thu Jun 9 23:21:07 2011 UTC (23 months, 1 week ago) by thornton
Original Path: trunk

Macro that compares two files and prints to a file an event number from each file where the tracks are traveling in the same direction. Can run through all tracks and fits of both files, or specific track and fit numbers given for each file.

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Revision 1123 - Directory Listing
Modified Thu Jun 9 21:39:31 2011 UTC (23 months, 1 week ago) by swatson
Original Path: trunk

Directory reorganization (step 3).

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Revision 1122 - Directory Listing
Modified Thu Jun 9 21:29:33 2011 UTC (23 months, 1 week ago) by swatson
Original Path: trunk

Directory reorganization (step 2).

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Revision 1121 - Directory Listing
Modified Thu Jun 9 21:26:09 2011 UTC (23 months, 1 week ago) by swatson
Original Path: trunk

Directory reorganization (step 1).

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Revision 1120 - Directory Listing
Modified Thu Jun 9 18:51:13 2011 UTC (23 months, 1 week ago) by swatson
Original Path: trunk

Fixed a small initialization bug.

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Revision 1119 - Directory Listing
Modified Wed Jun 8 22:56:50 2011 UTC (23 months, 1 week ago) by sharma
Original Path: trunk

Implemented Kalman Filter in forward direction 

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Revision 1118 - Directory Listing
Modified Tue Jun 7 17:52:14 2011 UTC (23 months, 2 weeks ago) by rgbaker
Original Path: trunk

Continued work to integrate TPCLeastSquaresFit
- Add "friend" declaration in TPCTrack.h
- Generalize to use hits OR digits
- Obtain hits/digits from track correctly
- Create and save TPCTrackFit objects (not complete yet)

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Revision 1117 - Directory Listing
Modified Mon Jun 6 20:24:17 2011 UTC (23 months, 2 weeks ago) by sharma
Original Path: trunk

Fixed typo

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Revision 1116 - Directory Listing
Modified Mon Jun 6 20:21:53 2011 UTC (23 months, 2 weeks ago) by rgbaker
Original Path: trunk

Remove obsolete GetDigits(bkt) method from TPCClusterFinder 
This method is not used anywhere, so no other changes are
associated.

The TPCClusterFinder::GetDigits(bkt) method does not make
sense if we allow TPCSnapshotBuilder to create digits in
the "wrong volume."  (Would need at LEAST bkt and vol)

For TPCLeastSquareFit, fix typo in calculation of cross
product in PointLineDistance method.

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Revision 1115 - Directory Listing
Modified Sat Jun 4 02:53:08 2011 UTC (23 months, 2 weeks ago) by sharma
Original Path: trunk

Transformed measurement points for the Kalman Filter are now saved to the output root file

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Revision 1114 - Directory Listing
Modified Fri Jun 3 23:22:04 2011 UTC (23 months, 2 weeks ago) by sharma
Original Path: trunk

Now performs a weighted fit

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Revision 1113 - Directory Listing
Modified Fri Jun 3 22:14:59 2011 UTC (23 months, 2 weeks ago) by swatson
Original Path: trunk

Small compatibilty fix for the new version of NiffteRootIO.

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Revision 1112 - Directory Listing
Modified Fri Jun 3 16:44:56 2011 UTC (23 months, 2 weeks ago) by lsnyder
Original Path: trunk

Added macro to the sandbox

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Revision 1111 - Directory Listing
Modified Fri Jun 3 16:37:33 2011 UTC (23 months, 2 weeks ago) by lsnyder
Original Path: trunk

added macro to the sandbox

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Revision 1110 - Directory Listing
Modified Fri Jun 3 06:39:14 2011 UTC (23 months, 2 weeks ago) by jklay
Original Path: trunk

infrastructure changes in preparation for multiple file handling, major overhaul of database interfaces, addition of pad calibration and eda card location tables

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Revision 1109 - Directory Listing
Modified Thu Jun 2 23:16:43 2011 UTC (23 months, 2 weeks ago) by thornton
Original Path: trunk

Added FR4 as a material in the Geant4 simulation. FR4 is now the material for the cathode and pad plane. A hole in the pad plane was created for the source/source backing to the place later. The copper and gold layer to the cathode plane still needs to be added.

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Revision 1108 - Directory Listing
Modified Thu Jun 2 00:11:51 2011 UTC (23 months, 2 weeks ago) by sharma
Original Path: trunk

Added Hit List vector

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Revision 1107 - Directory Listing
Modified Wed Jun 1 18:52:26 2011 UTC (23 months, 2 weeks ago) by dlduke
Original Path: trunk

Updates to NewReports.C

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Revision 1106 - Directory Listing
Modified Wed Jun 1 18:42:51 2011 UTC (23 months, 2 weeks ago) by rgbaker
Original Path: trunk

Update event display to handle the (newly corrected) Fitted() parameters for
all types of tracks.

Miscellaneous modifications to TrackAngleAndVertexAnalysis.C  (my personal
copy has been out of synch with repository for a while, so this is probably
quite a few changes...  good to get back in synch)

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Revision 1105 - Directory Listing
Modified Wed Jun 1 17:39:58 2011 UTC (23 months, 2 weeks ago) by rgbaker
Original Path: trunk

New xml files to configure "mix & match" track finder/fitter options

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Revision 1104 - Directory Listing
Modified Wed Jun 1 17:38:52 2011 UTC (23 months, 2 weeks ago) by rgbaker
Original Path: trunk

Complete implementation of intercompatibility of track finders and fitters
Users may now "mix & match" track finders and track fitters, and may also
run both track fitters in the same job after either track finder.

Updated TPCFitType_t enum to explicitly set the values for kFitStd=1, kFitPCA=2
and kFitKalman=3 as well as define new constants kNotFit=0 kFitStdBackwards = 101,
kFitPCABackwards=102, kFitKalmanBackwards=103

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Revision 1103 - Directory Listing
Modified Thu May 19 04:29:51 2011 UTC (2 years ago) by sharma
Original Path: trunk

Made room for a simple Principal Component Analysis fit

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Revision 1102 - Directory Listing
Modified Fri May 13 14:52:43 2011 UTC (2 years ago) by rgbaker
Original Path: trunk

Update detsim modules to change Run() method to Event()

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Revision 1101 - Directory Listing
Modified Thu May 12 14:43:26 2011 UTC (2 years ago) by swatson
Original Path: trunk

Sets NaN when new measurements cannot be made.  Improved behavior when very slow ramp rates are requested.

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Revision 1100 - Directory Listing
Modified Thu May 5 21:09:35 2011 UTC (2 years ago) by swatson
Original Path: trunk

Added the custom color palette discussed in today's phone conference.

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Revision 1099 - Directory Listing
Modified Thu May 5 18:14:04 2011 UTC (2 years ago) by rgbaker
Original Path: trunk

New "CALIBRATION" method to form derivative digits with zero threshold and no truncation of the waveforms

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Revision 1098 - Directory Listing
Modified Wed May 4 23:48:58 2011 UTC (2 years ago) by swatson
Original Path: trunk

Channel demux code is now built into a library.  Added a very rough MIDAS frontend for the channel demux process (.pcap to .cdrf files).

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Revision 1097 - Directory Listing
Modified Wed May 4 16:49:29 2011 UTC (2 years ago) by rgbaker
Original Path: trunk

Move implementation of accessor methods to .cxx file and add range error checking

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Revision 1096 - Directory Listing
Modified Tue May 3 20:04:33 2011 UTC (2 years ago) by swatson
Original Path: trunk

Cleanup.

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Revision 1095 - Directory Listing
Modified Tue May 3 16:43:56 2011 UTC (2 years ago) by swatson
Original Path: trunk

Improved trip detection, added trip reset.  Improved checks and limitations for demanded voltages.

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Revision 1094 - Directory Listing
Modified Tue May 3 00:46:06 2011 UTC (2 years ago) by rgbaker
Original Path: trunk

Add a first (dummy) implementation of a calibration constants object
Modify TPCSnapshotBuilder to use this object

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Revision 1093 - Directory Listing
Modified Mon May 2 23:58:57 2011 UTC (2 years ago) by rgbaker
Original Path: trunk

Fixed typo in class declaration

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Revision 1092 - Directory Listing
Modified Mon May 2 21:43:49 2011 UTC (2 years ago) by swatson
Original Path: trunk

Added current trip limit for ramping, (attempted) ramp-down on exit, and trip detection log message.

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Revision 1091 - Directory Listing
Modified Mon May 2 20:41:10 2011 UTC (2 years ago) by rgbaker
Original Path: trunk

Generalize TPCModule base class to add "hooks" for the task manager to use
for start/end of run and end of job processes (primarily for calibration
modules which may accumulate statistics over multiple runs and then save
the calibration results at the end of job).

Changed name of "Run()" method to "Event()" to more accurately reflect the
functionality and avoid confusion with "run number"

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Revision 1090 - Directory Listing
Modified Mon May 2 18:50:41 2011 UTC (2 years ago) by rgbaker
Original Path: trunk

First draft of a generic base class for TPC Calibration objects

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Revision 1089 - Directory Listing
Modified Sat Apr 30 22:58:26 2011 UTC (2 years ago) by swatson
Original Path: trunk

Improved power supply initialization.  Fixed several cases where disabled HV supplies were not properly ignored.

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Revision 1088 - Directory Listing
Modified Fri Apr 29 01:43:13 2011 UTC (2 years ago) by swatson
Original Path: trunk

[checkpoint/incomplete] Significant changes to HV frontend (added one user "master" variable to ramp all channels up/down, reverted ramp technique to be more like drivers/class/hv.c, HV demand voltages are retained until changed by user).

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Revision 1087 - Directory Listing
Modified Thu Apr 28 23:58:39 2011 UTC (2 years ago) by swatson
Original Path: trunk

Fixed a data member initialization.

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Revision 1086 - Directory Listing
Modified Thu Apr 28 16:38:32 2011 UTC (2 years ago) by hqu
Original Path: trunk

In progress to store slow data into persistent database

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Revision 1085 - Directory Listing
Modified Wed Apr 27 22:59:58 2011 UTC (2 years ago) by dtowell
Original Path: trunk

more status reporting

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Revision 1084 - Directory Listing
Modified Tue Apr 26 19:03:32 2011 UTC (2 years ago) by swatson
Original Path: trunk

Cleanup and fixes (CR to LF, sprintf to snprintf, removed some unnecessary literals, etc.).

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Revision 1083 - Directory Listing
Modified Tue Apr 26 18:59:56 2011 UTC (2 years ago) by hqu
Original Path: trunk

save gas pressure as well

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Revision 1082 - Directory Listing
Modified Sun Apr 24 19:55:52 2011 UTC (2 years ago) by sharma
Original Path: trunk

PlotTracks now plots markers to denote the track start and end points(Red marker is the start point)

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Revision 1081 - Directory Listing
Modified Sun Apr 24 19:54:29 2011 UTC (2 years ago) by sharma
Original Path: trunk

New suggested values for reconstruction modules

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Revision 1080 - Directory Listing
Modified Sun Apr 24 19:53:56 2011 UTC (2 years ago) by sharma
Original Path: trunk

Corrected track vertex estimation

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Revision 1079 - Directory Listing
Modified Sat Apr 23 06:17:28 2011 UTC (2 years ago) by sharma
Original Path: trunk

Updated the Plot Tracks function

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Revision 1078 - Directory Listing
Modified Sat Apr 23 06:15:27 2011 UTC (2 years ago) by sharma
Original Path: trunk

Made some changes to the Hough and Kalman Classes to help resolve some of the reconstruction pathologies. 

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Revision 1077 - Directory Listing
Modified Fri Apr 22 17:34:23 2011 UTC (2 years ago) by dlduke
Original Path: trunk

initial commit for dlduke sandbox

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Revision 1076 - Directory Listing
Modified Thu Apr 21 23:18:11 2011 UTC (2 years, 1 month ago) by hqu
Original Path: trunk

small correction

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Revision 1075 - Directory Listing
Modified Thu Apr 21 22:00:46 2011 UTC (2 years, 1 month ago) by hqu
Original Path: trunk

add data file format commit

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Revision 1074 - Directory Listing
Modified Thu Apr 21 20:14:10 2011 UTC (2 years, 1 month ago) by thornton
Original Path: trunk

Added more comments

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Revision 1073 - Directory Listing
Modified Thu Apr 21 20:10:53 2011 UTC (2 years, 1 month ago) by thornton
Original Path: trunk

Added ability to add a backing for the button source. To add the backing into the simulation the macros/Source.mac must be included in the macro already running; macros/vis.mac shows how to do this.

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Revision 1072 - Directory Listing
Modified Thu Apr 21 16:04:28 2011 UTC (2 years, 1 month ago) by dtowell
Original Path: trunk

more diagnostic reporting; status file messages (temperature)

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Revision 1071 - Directory Listing
Modified Thu Apr 21 00:23:30 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

adding productions scripts for aztec

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Revision 1070 - Directory Listing
Modified Wed Apr 20 23:43:22 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Fixed a couple of issues for running eventbuilder online with pcap file input (filename from PR, lazy file open). 

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Revision 1069 - Directory Listing
Modified Wed Apr 20 20:39:58 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Added delays to improve communication reliability for MacOS X.  Added temporary makefile that does not use autotools (there are build problems under OS X).

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Revision 1068 - Directory Listing
Modified Wed Apr 20 20:35:40 2011 UTC (2 years, 1 month ago) by hqu
Original Path: trunk

small correction

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Revision 1067 - Directory Listing
Modified Wed Apr 20 20:31:14 2011 UTC (2 years, 1 month ago) by hqu
Original Path: trunk

small correction

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Revision 1066 - Directory Listing
Modified Wed Apr 20 17:10:10 2011 UTC (2 years, 1 month ago) by hqu
Original Path: trunk

add modified odbhist.c

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Revision 1065 - Directory Listing
Modified Wed Apr 20 16:03:35 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Increased channel count to support 12 thermistors.

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Revision 1064 - Directory Listing
Modified Wed Apr 20 14:53:50 2011 UTC (2 years, 1 month ago) by hqu
Original Path: trunk

resubmit missing runs to Postgresql database

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Revision 1063 - Directory Listing
Modified Wed Apr 20 14:34:38 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Added frontend for IOtech DaqScan/2001.

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Revision 1062 - Directory Listing
Modified Wed Apr 20 01:21:10 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Simplified measurement section.  Switched from CRs to LFs.

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Revision 1061 - Directory Listing
Modified Mon Apr 18 14:12:21 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Fixed typo in ODB key name.  Cleanup.

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Revision 1060 - Directory Listing
Modified Sat Apr 16 00:03:14 2011 UTC (2 years, 1 month ago) by dtowell
Original Path: trunk

single packet pool for all cards, larger pool, improved performance

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Revision 1059 - Directory Listing
Modified Fri Apr 15 18:44:46 2011 UTC (2 years, 1 month ago) by rgbaker
Original Path: trunk

Fix macros so that they can be precompiled (previously worked only interactively)

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Revision 1058 - Directory Listing
Modified Fri Apr 15 17:58:15 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Communication tweaks to fix slow ramp speed.

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Revision 1057 - Directory Listing
Modified Fri Apr 15 17:45:22 2011 UTC (2 years, 1 month ago) by rgbaker
Original Path: trunk

Cleaned up compilation errors so this macro can now be run with pre-compilation!

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Revision 1056 - Directory Listing
Modified Fri Apr 15 16:53:32 2011 UTC (2 years, 1 month ago) by rgbaker
Original Path: trunk

Fixed typo extra character at start of first line

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Revision 1055 - Directory Listing
Modified Thu Apr 14 21:28:05 2011 UTC (2 years, 1 month ago) by gocha
Original Path: trunk

New sandbox for Gocha

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Revision 1054 - Directory Listing
Modified Thu Apr 14 21:24:50 2011 UTC (2 years, 1 month ago) by dtowell
Original Path: trunk

more reporting

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Revision 1053 - Directory Listing
Modified Thu Apr 14 00:58:39 2011 UTC (2 years, 1 month ago) by thornton
Original Path: trunk

More accurate simulation of transverse diffusion. Assumes 2D Gaussian circle, sigma equal to transverse diffusion radius, for charge share distribution instead of uniform. Creates about 2.47 times as many MCHits, and takes about 2.25 times as long (running on a laptop).

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Revision 1050 - Directory Listing
Modified Wed Apr 13 23:49:03 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

corrected test of which db table to write to

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Revision 1048 - Directory Listing
Modified Wed Apr 13 23:33:00 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

add branch name to SVN info

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Revision 1047 - Directory Listing
Modified Wed Apr 13 14:19:24 2011 UTC (2 years, 1 month ago) by dtowell
Original Path: trunk

test

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Revision 1044 - Directory Listing
Modified Tue Apr 12 21:10:02 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

updates for running on aztec

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Revision 1043 - Directory Listing
Modified Tue Apr 12 21:07:57 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

add a G4 macro for the MDC

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Revision 1042 - Directory Listing
Modified Sun Apr 10 01:25:26 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

update for more robust db handling

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Revision 1041 - Directory Listing
Modified Sat Apr 9 05:30:24 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

created job scripts for running at LLNL

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Revision 1039 - Directory Listing
Modified Wed Apr 6 23:39:16 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

change svn path

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Revision 1038 - Directory Listing
Modified Wed Apr 6 23:01:17 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Updated usage notes.

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Revision 1037 - Directory Listing
Modified Tue Apr 5 17:05:40 2011 UTC (2 years, 1 month ago) by rgbaker
Original Path: trunk

Create "official" XML files for reconstruction production runs

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Revision 1035 - Directory Listing
Modified Sat Apr 2 23:36:30 2011 UTC (2 years, 1 month ago) by niffte
Original Path: trunk

batch system cannot copy to /scratch

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Revision 1034 - Directory Listing
Modified Sat Apr 2 23:17:37 2011 UTC (2 years, 1 month ago) by niffte
Original Path: trunk

fix how script is called

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Revision 1033 - Directory Listing
Modified Sat Apr 2 22:43:41 2011 UTC (2 years, 1 month ago) by niffte
Original Path: trunk

reverted setup.sh to one that works on plexi - will have to work on universality later

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Revision 1032 - Directory Listing
Modified Sat Apr 2 22:21:46 2011 UTC (2 years, 1 month ago) by niffte
Original Path: trunk

updated bash setup script for plexi and default nuclear

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Revision 1031 - Directory Listing
Modified Sat Apr 2 22:14:02 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

small fix of csh syntax

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Revision 1030 - Directory Listing
Modified Sat Apr 2 22:06:21 2011 UTC (2 years, 1 month ago) by niffte
Original Path: trunk

added plexi settings plus default for nuclear

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Revision 1029 - Directory Listing
Modified Sat Apr 2 21:56:25 2011 UTC (2 years, 1 month ago) by niffte
Original Path: trunk

added DrawDataType method

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Revision 1028 - Directory Listing
Modified Sat Apr 2 21:41:38 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

updated script for plexi, added QA macro from Luke

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Revision 1027 - Directory Listing
Modified Sat Apr 2 19:21:57 2011 UTC (2 years, 1 month ago) by lsnyder
Original Path: trunk

added quality analysis macro to sandbox

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Revision 1026 - Directory Listing
Modified Sat Apr 2 19:04:55 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

change the default db user to nifftedbread

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Revision 1025 - Directory Listing
Modified Sat Apr 2 01:55:50 2011 UTC (2 years, 1 month ago) by niffte
Original Path: trunk

converted mdc scripts to bash, updated for plexi

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Revision 1024 - Directory Listing
Modified Fri Apr 1 20:48:54 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

updates to installation scripts - now different ones for different shells

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Revision 1023 - Directory Listing
Modified Fri Apr 1 17:30:50 2011 UTC (2 years, 1 month ago) by niffte
Original Path: trunk

remove stdout from scripts so they can be invoked from non-login shells without error

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Revision 1022 - Directory Listing
Modified Thu Mar 31 19:19:47 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Added options for "fast" and "slow/methodical" event builder strategies.

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Revision 1021 - Directory Listing
Modified Thu Mar 31 19:07:00 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Online event builder can now use an input PCAP file that is being written by the packet receiver.

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Revision 1020 - Directory Listing
Modified Thu Mar 31 18:02:08 2011 UTC (2 years, 1 month ago) by rgbaker
Original Path: trunk

New report generation macro, updates to quality plot macro

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Revision 1019 - Directory Listing
Modified Thu Mar 31 16:15:58 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

fix compiler warning by removing unused variable

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Revision 1018 - Directory Listing
Modified Thu Mar 31 16:09:53 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

update gas mixture so P10 matches volume ratio

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Revision 1017 - Directory Listing
Modified Thu Mar 31 15:28:54 2011 UTC (2 years, 1 month ago) by sharma
Original Path: trunk

Added fit types to TPCConstants.h

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Revision 1016 - Directory Listing
Modified Thu Mar 31 03:05:11 2011 UTC (2 years, 1 month ago) by dtowell
Original Path: trunk

added edaq_cdrf_dump tool
added -v for verbose to edaq_channel_demux
fixed sync bug

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Revision 1015 - Directory Listing
Modified Wed Mar 30 21:47:29 2011 UTC (2 years, 1 month ago) by sharma
Original Path: trunk

Fixed small bug in header file

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Revision 1014 - Directory Listing
Modified Wed Mar 30 20:58:51 2011 UTC (2 years, 1 month ago) by niffte
Original Path: trunk

oops - somehow lost important changes with last update

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Revision 1013 - Directory Listing
Modified Wed Mar 30 20:45:02 2011 UTC (2 years, 1 month ago) by niffte
Original Path: trunk

corrections for plexi

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Revision 1012 - Directory Listing
Modified Wed Mar 30 20:44:29 2011 UTC (2 years, 1 month ago) by niffte
Original Path: trunk

corrections for plexi

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Revision 1011 - Directory Listing
Modified Wed Mar 30 19:56:27 2011 UTC (2 years, 1 month ago) by thornton
Original Path: trunk

New composition of P10Gas that is 90% Ar, 10%CH4 by volume

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Revision 1010 - Directory Listing
Modified Wed Mar 30 19:53:59 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

adjust output directory settings

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Revision 1009 - Directory Listing
Modified Wed Mar 30 19:08:00 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Performance improvement for loading channel data input files.

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Revision 1008 - Directory Listing
Modified Tue Mar 29 18:24:07 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

updated hough radius parameter

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Revision 1007 - Directory Listing
Modified Tue Mar 29 14:52:45 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Made small improvements to duplicate Ethernet frame rejection.

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Revision 1006 - Directory Listing
Modified Tue Mar 29 07:18:21 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

make separate reco config files for running full 4pi and sextant 0 reconstruction, add jobs to mdc script so both are run

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Revision 1005 - Directory Listing
Modified Tue Mar 29 06:54:43 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

remove unnecessary cout

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Revision 1004 - Directory Listing
Modified Tue Mar 29 06:42:24 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

updated parameter lists and inclusion of P10 gas in G4 macro

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Revision 1003 - Directory Listing
Modified Tue Mar 29 06:41:15 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

minor improvement to i/o

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Revision 1002 - Directory Listing
Modified Mon Mar 28 23:51:51 2011 UTC (2 years, 1 month ago) by thornton
Original Path: trunk

Changed gas pressure for MDC run. Gas pressure is equal to the pressure of run 100000314.

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Revision 1001 - Directory Listing
Modified Mon Mar 28 23:18:29 2011 UTC (2 years, 1 month ago) by thornton
Original Path: trunk

Moved the creation of Methane into src/TPCDetectorConstruction.cc

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Revision 1000 - Directory Listing
Modified Mon Mar 28 21:02:52 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

reverting TPCKalman back to version 914.  Bug fix introduced in r985 not necessary now.  Does not create new tracks for the track list.  It updates the existing tracks with the fit values

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Revision 999 - Directory Listing
Modified Mon Mar 28 17:02:37 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Tweaked some parameters to improve "correctness" of built events.  Added a few small performance improvements.

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Revision 998 - Directory Listing
Modified Sun Mar 27 23:53:23 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Added (very rough) macro for 2D hexagonal pad plane histograms.  Sums ADC from digits at the x y positions of pads on pad planes.

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Revision 997 - Directory Listing
Modified Sun Mar 27 22:53:57 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Changed offset source position (+x,+y) alphas to Volume 0 (-z) to better approximate recent runs.  Changed angular distributions to be flat in cos(theta).

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Revision 996 - Directory Listing
Modified Sun Mar 27 05:50:26 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

make user level sandboxes, commit the MCAssociation QA macros

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Revision 995 - Directory Listing
Modified Fri Mar 25 22:07:29 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

draw MCParticle trajectory up to its end point, rather than to the edge of the drift volume

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Revision 994 - Directory Listing
Modified Fri Mar 25 22:06:30 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

added siminfo passing from persistent to transient TPCADCSignal

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Revision 993 - Directory Listing
Modified Fri Mar 25 18:55:16 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

added last point on transported MC particle so we can compare the reconstructed range to the simulated range

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Revision 992 - Directory Listing
Modified Fri Mar 25 01:15:21 2011 UTC (2 years, 1 month ago) by thornton
Original Path: trunk

P10GasDefault is now defined by 90% Ar 10% CH4 instead by number of atoms for Ar, C, and H. Same implementation that is inside P10Gas.mac

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Revision 991 - Directory Listing
Modified Fri Mar 25 01:02:56 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

moved TPCSnapshotBuilder and NiffteCheckPad to the reconstruction config files for MDC

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Revision 990 - Directory Listing
Modified Fri Mar 25 00:33:41 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

remove unused random seeds from macros

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Revision 989 - Directory Listing
Modified Fri Mar 25 00:31:04 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

change the random number generator engine to MTwistEngine and use ROOT TRandom3 to set the seeds for it

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Revision 988 - Directory Listing
Modified Fri Mar 25 00:30:10 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

remove unused random seeds from macro

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Revision 987 - Directory Listing
Modified Thu Mar 24 19:12:02 2011 UTC (2 years, 1 month ago) by rgbaker
Original Path: trunk

Add TPCPid module, clean up some formatting

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Revision 986 - Directory Listing
Modified Thu Mar 24 19:07:59 2011 UTC (2 years, 1 month ago) by rgbaker
Original Path: trunk

Fix typo

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Revision 985 - Directory Listing
Modified Thu Mar 24 19:02:31 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Fixed a memory leak.

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Revision 984 - Directory Listing
Modified Thu Mar 24 18:42:22 2011 UTC (2 years, 1 month ago) by rgbaker
Original Path: trunk

Added config parameter DigitsAsHits = 0 to preexisting xml files that use TPCHitFinder

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Revision 983 - Directory Listing
Modified Thu Mar 24 18:28:44 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

added valid runtype checking and correct event generation macro selection for each type

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Revision 982 - Directory Listing
Modified Thu Mar 24 17:59:21 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

add geantino transportation to simulation so we can keep track of the energy/momentum carried away by neutrons

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Revision 981 - Directory Listing
Modified Thu Mar 24 17:17:56 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

use TRandom3 generator and set the seed based on the clock time to get statistically safe random numbers for MDC

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Revision 980 - Directory Listing
Modified Thu Mar 24 17:13:46 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

use TRandom3 generator and set the seed based on the clock time to get statistically safe random numbers for MDC

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Revision 979 - Directory Listing
Modified Thu Mar 24 16:45:29 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Removed use of "extended initializer list" (draft c++0x feature).

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Revision 978 - Directory Listing
Modified Thu Mar 24 15:37:01 2011 UTC (2 years, 1 month ago) by lsnyder
Original Path: trunk

fix Cf252 fission sim

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Revision 977 - Directory Listing
Modified Thu Mar 24 15:26:10 2011 UTC (2 years, 1 month ago) by lsnyder
Original Path: trunk

fix fission sim

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Revision 976 - Directory Listing
Modified Thu Mar 24 15:02:03 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Small build fix.

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Revision 975 - Directory Listing
Modified Thu Mar 24 01:36:01 2011 UTC (2 years, 1 month ago) by lsnyder
Original Path: trunk

Fix neutron mass in fragment sim

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Revision 974 - Directory Listing
Modified Wed Mar 23 23:16:11 2011 UTC (2 years, 1 month ago) by swatson
Original Path: trunk

Modified offline event builder to calculate begin/end of run dates from capture timestamps.

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Revision 973 - Directory Listing
Modified Wed Mar 23 20:03:20 2011 UTC (2 years, 1 month ago) by lsnyder
Original Path: trunk

Added Cf252 MDC simulation

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Revision 972 - Directory Listing
Modified Wed Mar 23 19:31:59 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

added a test program for working with simdb

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Revision 971 - Directory Listing
Modified Wed Mar 23 19:15:02 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

adding config scripts for the 2011 Cf252 MDC.  Exact lists of modules and parameter values are still being finalized

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Revision 970 - Directory Listing
Modified Wed Mar 23 19:14:04 2011 UTC (2 years, 1 month ago) by jklay
Original Path: trunk

updated scripts for running MDC jobs on plexi.  Scripts are still in testing phase

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Revision 969 - Directory Listing
Modified Wed Mar 23 02:25:37 2011 UTC (2 years, 2 months ago) by hqu
Original Path: trunk

add utilty for committing the information from midas ODB to SQL database

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Revision 968 - Directory Listing
Modified Wed Mar 23 02:24:26 2011 UTC (2 years, 2 months ago) by hqu
Original Path: trunk

add utilty for committing the information from midas ODB to SQL database

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Revision 967 - Directory Listing
Modified Wed Mar 23 00:09:13 2011 UTC (2 years, 2 months ago) by swatson
Original Path: trunk

Added support for reading channel data record files to the standalone event builder.

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Revision 966 - Directory Listing
Modified Tue Mar 22 21:06:46 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

remove testAna.C

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Revision 965 - Directory Listing
Modified Tue Mar 22 18:52:32 2011 UTC (2 years, 2 months ago) by swatson
Original Path: trunk

Fixed some indexing and other small errors that became apparent when trying to read channel data files.

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Revision 964 - Directory Listing
Modified Tue Mar 22 06:59:51 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

include svn revision number in G4 output files

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Revision 963 - Directory Listing
Modified Tue Mar 22 04:24:46 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

changed variable type for stored run number

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Revision 962 - Directory Listing
Modified Tue Mar 22 04:23:31 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

corrected formatting of long int

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Revision 961 - Directory Listing
Modified Tue Mar 22 04:22:00 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

unified the geometry definition into just NiffteGeometryMap - all other instances get their parameters from it - and defined a geometry version string.  Default is called v2_03 and uses the pad plane version 2.  The only other defined alternative is v0_04, which has the same basic parameters, but the pad plane version is 0.  Added the ability to store the geometry version in the output file generated by GEANT and included the geometry version in the configuration info in detsim/reco files.  Finally, user can set the geometry version at the command line as an option when running niffte jobs

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Revision 960 - Directory Listing
Modified Tue Mar 22 03:56:05 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

comment out stdoutput

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Revision 959 - Directory Listing
Modified Tue Mar 22 00:33:16 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

fix compiler warnings

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Revision 958 - Directory Listing
Modified Mon Mar 21 21:28:12 2011 UTC (2 years, 2 months ago) by rgbaker
Original Path: trunk

New XML to utilize the hit = digit hit finder: configDigitAsHit.xml
Minor name correction for existing configOneDigitHits.xml

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Revision 957 - Directory Listing
Modified Mon Mar 21 18:29:55 2011 UTC (2 years, 2 months ago) by rgbaker
Original Path: trunk

Create method in TPCHitFinder to create one hit for each digit so that TPCTrackFinder and TPCTrackFitter can use digits instead of hits without modification

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Revision 956 - Directory Listing
Modified Mon Mar 21 00:34:39 2011 UTC (2 years, 2 months ago) by swatson
Original Path: trunk

Removed executable property.

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Revision 955 - Directory Listing
Modified Sun Mar 20 19:26:24 2011 UTC (2 years, 2 months ago) by dtowell
Original Path: trunk

cards properly flush on request
edaq_channel_demux requests cards to flush before closing run

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Revision 954 - Directory Listing
Modified Sat Mar 19 20:34:20 2011 UTC (2 years, 2 months ago) by sharma
Original Path: trunk

Removed some excess debug statements 

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Revision 953 - Directory Listing
Modified Sat Mar 19 20:22:52 2011 UTC (2 years, 2 months ago) by sharma
Original Path: trunk

Digit binning introduced, this should improve the performance of the Kalman Filter. The tracks also store the digit and digit aggregates stored as hits. 

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Revision 952 - Directory Listing
Modified Fri Mar 18 06:42:25 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

last edit (I hope) to set the default GEANT4

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Revision 951 - Directory Listing
Modified Fri Mar 18 06:39:15 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

added some missing spaces in output file format

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Revision 950 - Directory Listing
Modified Fri Mar 18 05:59:25 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

oops.  try again

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Revision 949 - Directory Listing
Modified Fri Mar 18 05:58:30 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

a few more updates for the install script

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Revision 948 - Directory Listing
Modified Fri Mar 18 04:32:49 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

added $ROOTSYS/lib to LD_LIBRARY_PATH

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Revision 947 - Directory Listing
Modified Fri Mar 18 03:56:18 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

update default external software versions

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Revision 946 - Directory Listing
Modified Fri Mar 18 03:24:33 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

make software versions in setup scripts match defaults in install script

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Revision 945 - Directory Listing
Modified Fri Mar 18 00:02:46 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

added niffte include paths to all makefiles so no more circular dependencies during a fresh build

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Revision 944 - Directory Listing
Modified Thu Mar 17 22:40:42 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

remove unused class TPCRunAction

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Revision 943 - Directory Listing
Modified Thu Mar 17 22:37:06 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

added ability to set the run number for simulations

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Revision 942 - Directory Listing
Modified Thu Mar 17 05:15:24 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

include siminfo in the hybrid digits

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Revision 941 - Directory Listing
Modified Thu Mar 17 00:13:42 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

updated dummy data macro to output file with correct new format, including individual vertex location for each particle

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Revision 940 - Directory Listing
Modified Thu Mar 17 00:10:50 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

updates to allow positioning each particle at a different vertex

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Revision 939 - Directory Listing
Modified Wed Mar 16 23:26:16 2011 UTC (2 years, 2 months ago) by rgbaker
Original Path: trunk

Updated example xml file that sets the MaxPointsForHybridMerge parameter used by the HYBRID digit formation algorithm

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Revision 938 - Directory Listing
Modified Wed Mar 16 23:24:41 2011 UTC (2 years, 2 months ago) by rgbaker
Original Path: trunk

Full implementation of HYBRID digit formation algorithm
If number of consecutive digits for a single pixel exceeds a threshold,
multiple hybrid digits are created.  Threshold can be set in XML file.

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Revision 937 - Directory Listing
Modified Wed Mar 16 17:31:25 2011 UTC (2 years, 2 months ago) by rgbaker
Original Path: trunk

Example configuration file for HYBRID digit creation

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Revision 936 - Directory Listing
Modified Wed Mar 16 17:27:49 2011 UTC (2 years, 2 months ago) by rgbaker
Original Path: trunk

Added new "HYBRID" Digit algorithm (preliminary) that converts DERIVATIVE digits to pseudo-TRADITIONAL digits 
This first implementation starts by finding sets of DERIVATIVE digits for the same pixel in consecutive buckes
and creating a single digit by summing the ADC values and taking the weighted average of the bucket numbers

TODO: create multiple Hybrid digits when the number of consecutive buckets exceeds some threshold

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Revision 935 - Directory Listing
Modified Wed Mar 16 04:04:07 2011 UTC (2 years, 2 months ago) by rgbaker
Original Path: trunk

Add "CF 252" labels to plots, minor format changes

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Revision 934 - Directory Listing
Modified Tue Mar 15 23:13:34 2011 UTC (2 years, 2 months ago) by lindenle
Original Path: trunk

started to work on least squares fitter

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Revision 933 - Directory Listing
Modified Tue Mar 15 16:54:20 2011 UTC (2 years, 2 months ago) by swatson
Original Path: trunk

Fixed some warnings and errors from ACLiC compilation.

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Revision 932 - Directory Listing
Modified Tue Mar 15 16:34:38 2011 UTC (2 years, 2 months ago) by swatson
Original Path: trunk

Fixed a segfault that occurs when output is a raw file.

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Revision 931 - Directory Listing
Modified Mon Mar 14 02:10:46 2011 UTC (2 years, 2 months ago) by swatson
Original Path: trunk

Updated for ROOT 5.28 (event display can draw digits as hexagonal voxels).  This version does not work with ROOT 5.26.

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Revision 930 - Directory Listing
Modified Sun Mar 13 22:04:08 2011 UTC (2 years, 2 months ago) by dtowell
Original Path: trunk

first time for actual output data

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Revision 929 - Directory Listing
Modified Sat Mar 12 03:30:57 2011 UTC (2 years, 2 months ago) by dtowell
Original Path: trunk

runs some

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Revision 928 - Directory Listing
Modified Sat Mar 12 02:39:38 2011 UTC (2 years, 2 months ago) by dtowell
Original Path: trunk

compiles but does not run yet

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Revision 927 - Directory Listing
Modified Fri Mar 11 01:03:44 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

updated default root version to v5-28-00a

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Revision 926 - Directory Listing
Modified Fri Mar 11 00:34:26 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

updates for including logos

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Revision 925 - Directory Listing
Modified Thu Mar 10 23:15:37 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

updates to include niffte logo and labels

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Revision 924 - Directory Listing
Modified Thu Mar 10 23:08:19 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

utility for adding niffte logo and preliminary or performance tag to plots.  Just #include the NifftePlotUtilities.h in your macro and call the methods.

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Revision 923 - Directory Listing
Modified Thu Mar 10 22:23:32 2011 UTC (2 years, 2 months ago) by rgbaker
Original Path: trunk

Some minor adjustments, things still not working exactly as intended

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Revision 922 - Directory Listing
Modified Thu Mar 10 21:51:46 2011 UTC (2 years, 2 months ago) by rgbaker
Original Path: trunk

First (preliminary) version of a macro to generate "Standard" format plots
Some updates still needed, but this should get us started!

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Revision 921 - Directory Listing
Modified Thu Mar 10 18:32:38 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

added the svn revision number to the output Configuration information.  Will only update the revision when autogen.sh is called, so local revisions will not be reflected.  Useful primarily for production purposes

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Revision 920 - Directory Listing
Modified Thu Mar 10 02:31:35 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

added feature that the configuration file contents and the input file name are written to the output root file in the TObjString "Configuration" accessible at the top level of the ROOT file, should it be needed

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Revision 919 - Directory Listing
Modified Wed Mar 9 19:50:21 2011 UTC (2 years, 2 months ago) by swatson
Original Path: trunk

Script to modify threshold and hysteresis settings in the ODB for all ADC channels on all EtherDAQ cards.

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Revision 918 - Directory Listing
Modified Wed Mar 9 16:13:47 2011 UTC (2 years, 2 months ago) by dtowell
Original Path: trunk

initial checkin of new ether stream demuxer

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Revision 917 - Directory Listing
Modified Thu Mar 3 21:30:53 2011 UTC (2 years, 2 months ago) by rgbaker
Original Path: trunk

Corrected algorithm for computing "best vertex" x and y coordinates.
The old algorithm assumed that z0 = 0, which was true for older 
versions of the TPCTrackFitter, but the new algorithms use the
TrackStartPoint which is the location of the first digit on the
track, not necessarily at z=0.

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Revision 916 - Directory Listing
Modified Wed Mar 2 19:07:56 2011 UTC (2 years, 2 months ago) by rgbaker
Original Path: trunk

Creating new area for users to put macros and analysis tools that they are playing around with

New DigitTest.C macro that generates dE/dx and other plots

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Revision 915 - Directory Listing
Modified Sun Feb 27 07:59:16 2011 UTC (2 years, 2 months ago) by rgbaker
Original Path: trunk

New Analysis Utility to specify and apply cuts to filter tracks

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Revision 914 - Directory Listing
Modified Fri Feb 25 06:08:35 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

updates for correct quality assignment

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Revision 913 - Directory Listing
Modified Fri Feb 25 04:56:08 2011 UTC (2 years, 2 months ago) by jklay
Original Path: trunk

minor correction to permit digit-level association

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Revision 912 - Directory Listing
Modified Sat Feb 19 00:31:29 2011 UTC (2 years, 3 months ago) by jklay
Original Path: trunk

updates for making MC Association for track objects.  User can add the TPCMCAssociation module to their reconstruction job or run it as a standalone module.  The vector that is filled by the association is an ordered list of mc particle ids contributing to the reconstructed track and their relative quality - a quality value of 1.00 corresponds to a perfect match with a given mc particle.  Anything lower than that reflects a poor association.  It is up to the analyzer to decide what threshold to set for good association.  Certainly anything less than 0.5 should be considered bad.

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Revision 911 - Directory Listing
Modified Fri Feb 18 20:20:58 2011 UTC (2 years, 3 months ago) by rgbaker
Original Path: trunk

Modify Digit formation process to use an array of digit thresholds (one per pixel) instead of a single uniform threshold.  
The default constructor for the TPCSnapshotBuilder Class currently sets the default value for all channels.
This constructor still needs to be modified when a database of channel thresholds is available.

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Revision 910 - Directory Listing
Modified Thu Feb 17 22:30:28 2011 UTC (2 years, 3 months ago) by thornton
Original Path: trunk

Code that has a material composed of materials and not just elements

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Revision 909 - Directory Listing
Modified Thu Feb 17 21:05:40 2011 UTC (2 years, 3 months ago) by jklay
Original Path: trunk

example macro for selecting "good" events and storing that subset to a new file

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Revision 908 - Directory Listing
Modified Wed Feb 16 22:18:00 2011 UTC (2 years, 3 months ago) by thornton
Original Path: trunk

Fixed gas mixture

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Revision 907 - Directory Listing
Modified Thu Feb 10 23:12:54 2011 UTC (2 years, 3 months ago) by swatson
Original Path: trunk

Improved dE/dx calculation (assume uniform Edep within each voxel, switch to 1 mm binning).  Fixed an issue with dE/dx canvas handling.

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Revision 906 - Directory Listing
Modified Sat Feb 5 02:12:24 2011 UTC (2 years, 3 months ago) by rgbaker
Original Path: trunk

Modify TPC task management so that the TPCTrack vector in an event is not "const"

Make all modifier methods for TPCTrack class private so that they can only be
used by "friend" classes

Update TPCTrackFitter to insert TPCTrackFit objects into the existing track and
remove the unneeded copying of the original track object.

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Revision 905 - Directory Listing
Modified Fri Feb 4 05:18:46 2011 UTC (2 years, 3 months ago) by rgbaker
Original Path: trunk

Set xzSlope and yzSlope parameters in track object.  
Add associated methods to TPCTrack and NiffteTPCTrack classes

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Revision 904 - Directory Listing
Modified Fri Feb 4 02:16:02 2011 UTC (2 years, 3 months ago) by jklay
Original Path: trunk

Changed the ClassDef number for the NiffteTPCTrackFit objects.  Zero (0) means I/O is disabled.

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Revision 903 - Directory Listing
Modified Thu Feb 3 14:55:21 2011 UTC (2 years, 3 months ago) by lindenle
Original Path: trunk

copied over the rest of the update

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Revision 902 - Directory Listing
Modified Thu Feb 3 01:14:09 2011 UTC (2 years, 3 months ago) by lindenle
Original Path: trunk

 modified shape of Sp Fission source

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Revision 901 - Directory Listing
Modified Thu Feb 3 01:11:56 2011 UTC (2 years, 3 months ago) by lindenle
Original Path: trunk

 modified shape of Sp Fission source

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Revision 900 - Directory Listing
Modified Thu Feb 3 00:27:43 2011 UTC (2 years, 3 months ago) by lindenle
Original Path: trunk

 testing the sp fission addition to the code

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Revision 899 - Directory Listing
Modified Wed Feb 2 22:31:49 2011 UTC (2 years, 3 months ago) by lindenle
Original Path: trunk

added code for spontaneous fission

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Revision 898 - Directory Listing
Modified Wed Feb 2 22:30:07 2011 UTC (2 years, 3 months ago) by lindenle
Original Path: trunk

add in the source that is required for spontaneous fission sources

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Revision 897 - Directory Listing
Modified Wed Feb 2 19:33:11 2011 UTC (2 years, 3 months ago) by lindenle
Original Path: trunk

copied over the new classes from the new version

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Revision 896 - Directory Listing
Modified Wed Feb 2 19:29:01 2011 UTC (2 years, 3 months ago) by lindenle
Original Path: trunk

changed the library to so

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Revision 895 - Directory Listing
Modified Wed Feb 2 19:28:18 2011 UTC (2 years, 3 months ago) by lindenle
Original Path: trunk

Updated readme to explain that we now use the normal build process.

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Revision 894 - Directory Listing
Modified Wed Feb 2 19:26:11 2011 UTC (2 years, 3 months ago) by lindenle
Original Path: trunk

Changed to version 1.8 of the fission code available from 
http://nuclear.llnl.gov/simulation/

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Revision 893 - Directory Listing
Modified Wed Feb 2 18:04:51 2011 UTC (2 years, 3 months ago) by lindenle
Original Path: trunk

Added local clean to src Makefile

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Revision 892 - Directory Listing
Modified Wed Feb 2 18:00:17 2011 UTC (2 years, 3 months ago) by lindenle
Original Path: trunk

We do not need two copies of this code (silly) so i deleted the mcnpx directory, also got rid of the system dependent make files as I have added it into the standard niffte build system.

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Revision 891 - Directory Listing
Modified Wed Feb 2 17:45:44 2011 UTC (2 years, 3 months ago) by lindenle
Original Path: trunk

Modify build system for the geant_gen_fission to produce a shared object for use in the geant code

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Revision 890 - Directory Listing
Modified Wed Feb 2 14:08:29 2011 UTC (2 years, 3 months ago) by rgbaker
Original Path: trunk

Reimplement NiffteTPCTrack class to use pointers to fit objects

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Revision 889 - Directory Listing
Modified Wed Feb 2 14:07:43 2011 UTC (2 years, 3 months ago) by rgbaker
Original Path: trunk

Reimplement TPCTrack to use pointers to TPCTrackFit objects

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Revision 888 - Directory Listing
Modified Tue Feb 1 01:57:40 2011 UTC (2 years, 3 months ago) by jklay
Original Path: trunk

created methods in NiffteTPCXXX to convert persistent objects to transient ones and removed the corresponding obsolete code from NiffteTaskManager

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Revision 887 - Directory Listing
Modified Mon Jan 31 23:09:57 2011 UTC (2 years, 3 months ago) by rgbaker
Original Path: trunk

Updates and fixes related to the recent modifications to TPCTrack class

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Revision 886 - Directory Listing
Modified Mon Jan 31 23:08:52 2011 UTC (2 years, 3 months ago) by rgbaker
Original Path: trunk

Updates and fixes related to the recent modifications to the TPCTrack class

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Revision 885 - Directory Listing
Modified Sat Jan 29 00:16:10 2011 UTC (2 years, 3 months ago) by rgbaker
Original Path: trunk

Added NiffteTPCTrack and NiffteTPCTrackFit classes for persistent storage of new track objects

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Revision 884 - Directory Listing
Modified Fri Jan 28 21:23:22 2011 UTC (2 years, 3 months ago) by rgbaker
Original Path: trunk

Add new class to hold TPC Track Fit Parameters

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Revision 883 - Directory Listing
Modified Fri Jan 28 21:21:23 2011 UTC (2 years, 3 months ago) by rgbaker
Original Path: trunk

Add new class to hold TPC Track Fit Parameters, modify TPCTrack to hold a vector of candidiate fit parameters

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Revision 882 - Directory Listing
Modified Fri Jan 28 07:34:34 2011 UTC (2 years, 3 months ago) by rgbaker
Original Path: trunk

Clean up obsolete code, some new histograms and bug fixes

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Revision 881 - Directory Listing
Modified Thu Jan 27 17:51:58 2011 UTC (2 years, 3 months ago) by swatson
Original Path: trunk

Added support for setting begin-of-run comment and increased open event buffer limit in stand-alone event builder.  Removed unnecessary alloc from packet receiver.

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Revision 880 - Directory Listing
Modified Thu Jan 27 06:15:57 2011 UTC (2 years, 3 months ago) by jklay
Original Path: trunk

major updates to include siminfo in TPCADCSignals made from simulated digits; verified that MCinfo is saved in adcsignals, digits and hits; new data members for TPCTrack to include pid information; new module for TPC pid (just a template for now)

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Revision 879 - Directory Listing
Modified Thu Jan 27 05:57:36 2011 UTC (2 years, 3 months ago) by jklay
Original Path: trunk

update with vertex info

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Revision 878 - Directory Listing
Modified Thu Jan 27 05:56:05 2011 UTC (2 years, 3 months ago) by jklay
Original Path: trunk

macros for testing pid and mc info

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Revision 877 - Directory Listing
Modified Wed Jan 26 20:11:28 2011 UTC (2 years, 3 months ago) by swatson
Original Path: trunk

Replaced off-center Cm button source with a Carbon target foil in event display.  Corrected cathode plane and target holder thickness.

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Revision 876 - Directory Listing
Modified Wed Jan 26 18:36:06 2011 UTC (2 years, 3 months ago) by rgbaker
Original Path: trunk

Rename TPCTrack_T.h to TPCTrackFit_T.h

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Revision 875 - Directory Listing
Modified Wed Jan 26 18:23:37 2011 UTC (2 years, 3 months ago) by rgbaker
Original Path: trunk

New structure to hold Track Parameterization Information

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Revision 874 - Directory Listing
Modified Tue Jan 25 22:43:02 2011 UTC (2 years, 3 months ago) by thornton
Original Path: trunk

Recursion algorithm to find pads where diffusion charge should be shared (not committed yet)

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Revision 873 - Directory Listing
Modified Tue Jan 25 20:41:11 2011 UTC (2 years, 3 months ago) by swatson
Original Path: trunk

TPCKalman cleanup (reduced memory allocations, removed some unused code, output unchanged).

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Revision 872 - Directory Listing
Modified Tue Jan 25 19:52:48 2011 UTC (2 years, 3 months ago) by swatson
Original Path: trunk

Fixed some canvas/pad handling issues for dE/dx in the event display.  Improved track end point calculation and fixed some compilation warnings in TPCKalman.

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Revision 871 - Directory Listing
Modified Tue Jan 25 01:13:47 2011 UTC (2 years, 3 months ago) by swatson
Original Path: trunk

TPCHoughD cleanup (unused code removal, some coding convention fixes, memory allocations reduced, compiler warning fixes).  Re-enabled configuration parameter "HoughRadius" (for old behavior set HoughRadius = 0.4).  In configHough.xml: removed unused parameters, adjusted parameter defaults for real data and MC with SnapshotBuilder in P10 gas.

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Revision 870 - Directory Listing
Modified Thu Jan 20 19:43:02 2011 UTC (2 years, 4 months ago) by swatson
Original Path: trunk

Fixed a bug in Traditional SnapshotBuilder.  A poor waveform fit result could lead to allocation of very large amounts (8 gigabytes) of memory within a single event.

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Revision 869 - Directory Listing
Modified Wed Jan 19 23:33:45 2011 UTC (2 years, 4 months ago) by swatson
Original Path: trunk

Fixed a several memory leaks in the HoughD and Kalman modules.  Fixed an uninitialized variable bug in Hough that may cause it to find different tracks now.

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Revision 868 - Directory Listing
Modified Wed Jan 19 20:34:09 2011 UTC (2 years, 4 months ago) by swatson
Original Path: trunk

Small change to allow compilation with ROOT greater than 5.26.  The event display for TPCDigits and TPCMCHits (hexagonal and trapezoidal prisms) for ROOT >5.26 does not work.

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Revision 867 - Directory Listing
Modified Tue Jan 18 22:57:14 2011 UTC (2 years, 4 months ago) by jklay
Original Path: trunk

remove std::cout << std::endl; - bloats the log files

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Revision 866 - Directory Listing
Modified Tue Jan 18 20:39:37 2011 UTC (2 years, 4 months ago) by jklay
Original Path: trunk

cshell script for installing all of the external packages niffte depends on and setting up local environment.  May not work across platforms, but should give the user all the information needed to get a machine up and running.

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Revision 865 - Directory Listing
Modified Mon Jan 17 19:44:13 2011 UTC (2 years, 4 months ago) by lsnyder
Original Path: trunk

removed outdated Cf-252 simulation

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Revision 864 - Directory Listing
Modified Mon Jan 17 19:40:31 2011 UTC (2 years, 4 months ago) by lsnyder
Original Path: trunk

Added Cf-252 simulation with basic analysis macro

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Revision 863 - Directory Listing
Modified Sat Jan 15 00:37:49 2011 UTC (2 years, 4 months ago) by swatson
Original Path: trunk

Fixed large leak in NiffteTPCHits.  Fixed small leak in NiffteEventHeader.  NiffteDataBucket's default constructor did not initialize all of its data members.

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Revision 862 - Directory Listing
Modified Fri Jan 14 00:21:39 2011 UTC (2 years, 4 months ago) by swatson
Original Path: trunk

* detsim performance improvement: don't save NiffteMCHits created during detsim task to root file by default
* fix: memory leaks from variable sized objects (e.g., NiffteTPCTracks) that were saved with fixed size option for NiffteDataBucket::Put
* fix: to delete stale objects from NiffteDataBucket (e.g., prevents duplicate digit creation in successive reco jobs)
* allow a task to use only a raw input and raw output file (no root file)
* Loading track objects and conversion from NiffteTPCTrack to TPCTrack (in ::LoadEvent) was incomplete.

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Revision 861 - Directory Listing
Modified Thu Jan 13 22:09:16 2011 UTC (2 years, 4 months ago) by hqu
Original Path: trunk

add exeutable file for testing to create table and add data to it

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Revision 860 - Directory Listing
Modified Thu Jan 13 20:22:05 2011 UTC (2 years, 4 months ago) by thornton
Original Path: trunk

More optimal code to find the percentage of charge to be shared to neighboring pads (code only for hexagonal shape pads)

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Revision 859 - Directory Listing
Modified Thu Jan 13 17:43:36 2011 UTC (2 years, 4 months ago) by swatson
Original Path: trunk

Added an implementation for NiffteDataBucket::Remove.  This can be used to avoid some data duplication problems in NiffteTaskManager ROOT output files.

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Revision 858 - Directory Listing
Modified Mon Jan 10 23:29:36 2011 UTC (2 years, 4 months ago) by swatson
Original Path: trunk

Fixed small bug that caused compilation failure.

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Revision 857 - Directory Listing
Modified Mon Jan 10 22:39:13 2011 UTC (2 years, 4 months ago) by rgbaker
Original Path: trunk

Change Info message to debug

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Revision 856 - Directory Listing
Modified Mon Jan 3 04:25:09 2011 UTC (2 years, 4 months ago) by rgbaker
Original Path: trunk

Clean up analysis macros
More generalization and error checking in TrackAngleAndVertexAnalysis.C
Remove MoneyPlots.C as it is redundant with TrackAngleAndVertexAnanalysis.C

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Revision 855 - Directory Listing
Modified Thu Dec 16 19:40:46 2010 UTC (2 years, 5 months ago) by thornton
Original Path: trunk

Fixed typo in P10Gas macro, uncommitted needed lines in Cf252 macro, and changed a material name in TPCDetectorConstruction. 

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Revision 854 - Directory Listing
Modified Mon Dec 13 23:16:56 2010 UTC (2 years, 5 months ago) by rgbaker
Original Path: trunk

Set start and end positions of track to points actually on the fit line for the track

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Revision 853 - Directory Listing
Modified Mon Dec 13 23:16:03 2010 UTC (2 years, 5 months ago) by rgbaker
Original Path: trunk

Set Volume info when creating hits and clusters

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Revision 852 - Directory Listing
Modified Mon Dec 13 22:56:30 2010 UTC (2 years, 5 months ago) by rgbaker
Original Path: trunk

Add volume information to hits and clusters

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Revision 851 - Directory Listing
Modified Mon Dec 13 22:53:46 2010 UTC (2 years, 5 months ago) by rgbaker
Original Path: trunk

Incorporate volume information for TPC clusters and hits

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Revision 850 - Directory Listing
Modified Mon Dec 13 22:48:58 2010 UTC (2 years, 5 months ago) by rgbaker
Original Path: trunk

Add volume data item to clusters and hits

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Revision 849 - Directory Listing
Modified Sat Dec 11 16:27:52 2010 UTC (2 years, 5 months ago) by thornton
Original Path: trunk

Removed old macros

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Revision 848 - Directory Listing
Modified Sat Dec 11 16:17:44 2010 UTC (2 years, 5 months ago) by thornton
Original Path: trunk

These did not get added last time

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Revision 847 - Directory Listing
Modified Sat Dec 11 16:09:41 2010 UTC (2 years, 5 months ago) by thornton
Original Path: trunk

Added the ability to set the gas for a simulation run through a macro. Macros inside of Geant4 simulation directory moved to the macros directory. P10Gas and H2Gas macros show how to create the gas material and set it as the gas for the run. Cf242 macro shows how to run the gas macros inside a run macro.

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Revision 846 - Directory Listing
Modified Thu Dec 9 16:46:32 2010 UTC (2 years, 5 months ago) by swatson
Original Path: trunk

Small changes to allow TPCSnapshotBuilder module to run immediately before HoughD or TPCClusterFinder (i.e., in the same xml task configuration).

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Revision 845 - Directory Listing
Modified Fri Dec 3 22:25:10 2010 UTC (2 years, 5 months ago) by swatson
Original Path: trunk

Added rough dE/dx plots to event display (use option "dedx").  Reworked track drawing to use track start and end points.  Digits belonging to each track are available as a (hidden by default) child in the TEve Event hierarchy.

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Revision 844 - Directory Listing
Modified Fri Dec 3 21:17:28 2010 UTC (2 years, 5 months ago) by rgbaker
Original Path: trunk

Fixed bug setting track start point (x coordinate was being used for y and z as well)

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Revision 843 - Directory Listing
Modified Fri Dec 3 16:42:02 2010 UTC (2 years, 5 months ago) by swatson
Original Path: trunk

Small build fixes.

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Revision 842 - Directory Listing
Modified Thu Dec 2 19:36:44 2010 UTC (2 years, 5 months ago) by swatson
Original Path: trunk

Added a detsim configuration that runs the snapshotbuilder module.  Running the snapshotbuilder creates simulated digits that are similar to digits from real data (e.g., absolute z-position info is lost).

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Revision 841 - Directory Listing
Modified Thu Dec 2 19:20:37 2010 UTC (2 years, 5 months ago) by rgbaker
Original Path: trunk

Updated with more histograms (digits and hits per event, both with and without tracks)

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Revision 840 - Directory Listing
Modified Thu Dec 2 18:58:03 2010 UTC (2 years, 5 months ago) by swatson
Original Path: trunk

Added macro to find events with multiple active cards (long tracks) or large total ADC (Edep from fission fragments) in a root file that contains digits.

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Revision 839 - Directory Listing
Modified Wed Dec 1 23:37:10 2010 UTC (2 years, 5 months ago) by lindenle
Original Path: trunk

some changes to the build system

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Revision 838 - Directory Listing
Modified Wed Dec 1 21:15:47 2010 UTC (2 years, 5 months ago) by thornton
Original Path: trunk

Added comments

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Revision 837 - Directory Listing
Modified Sat Nov 27 01:09:31 2010 UTC (2 years, 5 months ago) by sharma
Original Path: trunk

Now plots using start and end points

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Revision 836 - Directory Listing
Modified Sat Nov 27 00:38:27 2010 UTC (2 years, 5 months ago) by sharma
Original Path: trunk

Changed fFitted from bool to int, this allows us to differentiate between tracks that have been fitted using the Kalman Filter and the traditional fitter

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Revision 835 - Directory Listing
Modified Mon Nov 22 18:23:31 2010 UTC (2 years, 5 months ago) by lsnyder
Original Path: trunk

corrected problems with Cf simulations

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Revision 834 - Directory Listing
Modified Thu Nov 18 00:20:51 2010 UTC (2 years, 6 months ago) by hqu
Original Path: trunk

update for multipule cards